LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g1649	ATGGGAAGGGGGAGAGTTGAACTGAAGAGGATAGAGAACAAAATTAACAGGCAAGTCACATTTGCTAAGAGGAGAAATGGGTTGCTCAAGAAGGCTTATGAGCTCTCTGTGCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCAGCAGCACCTCAAGTATGATGAAAACACTGGAGAAGTACCAAAAGTACAGCTACAGTGCACTGGAGACAACCCGACCAATTAACGACACTCAGAACTACCAGGAATACTTGAGATTAAAAGCAAGGGTAGAAGTCTTGCAACGATCACAAAGGAACCTACTGGGGGAAGATCTTGCCCAAATGAATACAAATGAGCTAGAGCAGCTTGAGAATCAACTGGAGTCAGCACTGAGGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTTCTGATCTTCACCACAGGTTGGAAGAAACTAATAATTCACAAGTTCAAGTAAGTCTAGCTTTAGAAGCTGGAGGATCTAACATTCATTACACCAACTTTCCACCTCAATCAGAGGGGTTCTTCCAGCCAGTACTGGGAGTTAATCCCAACTTGCAAATTGGATACAACCAGAGTGGTCCTGAAGATGCAAATGTTGGAGCTTCATCCTTAAGTATGCATGGATTCGCCTCTGGGTGGATGCTTTGA	693	0.4387	MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMKTLEKYQKYSYSALETTRPINDTQNYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTNELEQLENQLESALRNIRSTKTQFMLDQLSDLHHRLEETNNSQVQVSLALEAGGSNIHYTNFPPQSEGFFQPVLGVNPNLQIGYNQSGPEDANVGASSLSMHGFASGWML	230

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g1649	230	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Aed6g1649	230	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Aed6g1649	230	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Aed6g1649	230	Pfam	K-box region	86	161	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aed6g1649	230	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Aed6g1649	230	CDD	MADS_MEF2_like	2	78	IPR033896	GO:0000977\|GO:0045944
	Aed6g1649	230	ProSiteProfiles	K-box domain profile.	86	176	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aed6g1649	230	SUPERFAMILY	SRF-like	2	80	IPR036879	GO:0003677\|GO:0046983
	Aed6g1649	230	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	216	-	-
	Aed6g1649	230	PANTHER	DEVELOPMENTAL PROTEIN SEPALLATA 1	1	216	-	-
	Aed6g1649	230	Gene3D	-	13	83	IPR036879	GO:0003677\|GO:0046983
	Aed6g1649	230	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Aed6g1649	230	Coils	Coil	116	143	-	-
	Aed6g1649	230	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Aed6g1649	230	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g1649	Aed-Chr6	20358159	20363267	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g1649	1	203	MADS-box Gene Family	AT5G15800	59.910	2.23e-81	242

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Aed6g1649		K-box	7.9e-23	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g1649	K09264		-	gmx:100797819	409.068

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed10g1151	10	10763980	10772132	Aed6g1649	6	20358159	20363267	ECH
	Aed3g0256	3	1895097	1898060	Aed6g1649	6	20358159	20363267	ECH
	Aed3g0997	3	7511890	7518155	Aed6g1649	6	20358159	20363267	ECH
	Aed6g1649	6	20358159	20363267	Aed6g1649	6	20358159	20363267	ECH