Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1648 ATGGAATCTTGGAGCTATGTCCCTGAAGAAAAGGAGTGTGTCTCCAACGAACCACTCTCACCTCCCAACAACACTCTCGGGAGGAATAAAAATTCTTTCTTGGGCTGGGAACTCAAAACCCCATGTGGTTTTTCTAACGACATGTTGGGTTTGGGCCATCACACCATTGAGAATCAAGGTTTTGAGGATTTGGGTTTTCCTGAAATGTTGGGGAAACACATGTCCGATGATCTAATTGCCAGTGTTCCAACCAGAAAGGTGGATCCTAGTAGACAACAGCAACAACAACTACTACTACACAGTGACAGAATCATTAGCACTGTTGTGGATGCCCCAAATGGTTTTTCTCTAAGAGGGGACTCAAATTCCAAGATTTCTAATTCTAACTCAAATTCCCTCATTGATTTGAAGCTGGGTCGATTTGCTGACCATGGAGATTTCACTGATCCGGCGTCGTTTTCCAAAATTTTGTCTTCTTCTGAGTCATCAACGCCTCCTAAGAGAGTGAGAGCTTCAGGGTTGCATTCTCAAACTGCATATTGCCAAGTCTATGGCTGCAACAAGGATCTCAGCTCCTGTAAGGACTACCACAAGAGGCACAAGGTGTGTGAGGTTCACTCCAAGACTTCCATTGTTATAGTCAATGGCATTGAGCAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGAAGCTGCCGAAAACGCCTTGCAGGTCATAATGAGCGTAGAAGAAAACCACAAATGGGTATCCACACAGGAAAGTCTGGGAGGTTGCTTCAGCCATGTGGAGATAGCAAATTCCAGGGATCCATGCTAACATCATCTTTTATCCACCCTGAGATGCTTTCTAGTGGGGTCATGTGTTCCGAGAAATATGGTATGAGTGATTTCTGGAGACCTATCAAAGCAGAACACGCAGCTGGTTTACGGAATCTTTCTTTTATGCCTGCAACCAATGAAAATCCTCAGTCAAGATCTTTATTTCCATCATATAACGGAAAACAATTTCCTTTTCTTCATGAAAACAGAGCTACATCCACCACAGGAAGCATCTTCTGTGAGAGCAATAGCCACTATCCTTCTGCCCTTGGGGCCCAAAATTCTGGGTTGAGACCACTATTCCAGGACACTGCAGGAAATGAGGACTTCAATGTTTTTGATACCTCTTCAGCTGTTCGAGGATTATCGGGGATTTCAGACTCTTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAAAACTCTTCAAGCCAATCATCAGGAATTCCCTTGGCTCACTCCTTGGTTATTCCAAGCAGTCATACTCATAGCCATCACTACAACATGAGTCATGTCTCCAAAAAGATAGGAATAAGCTCACAGACTTCTTCAAGCCGAGTGTCGGATAGTTTCCCATCAGAACTAAATCATGCAGATGGAAGTCATCTCAGTCCTGTATTAATATCAGACAATAATGACATTGTAAACTATGATATGGCAGATGATATCTTCCAAGGTTCAGATTTCTTGAATGTGAAAGATCGTCTTTCCGGTGAAGATGGTGCAACCATTGACTTGCTTCAATTGTCATCACAGCTTCAGCGAGTTGAACATGAGAGGCAATCCTTGCAGGTGAAGCAAGAAAATGATTCTTCTTGCACTCTGCGGATTACATAA 1683 0.4314 MESWSYVPEEKECVSNEPLSPPNNTLGRNKNSFLGWELKTPCGFSNDMLGLGHHTIENQGFEDLGFPEMLGKHMSDDLIASVPTRKVDPSRQQQQQLLLHSDRIISTVVDAPNGFSLRGDSNSKISNSNSNSLIDLKLGRFADHGDFTDPASFSKILSSSESSTPPKRVRASGLHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTSIVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHTGKSGRLLQPCGDSKFQGSMLTSSFIHPEMLSSGVMCSEKYGMSDFWRPIKAEHAAGLRNLSFMPATNENPQSRSLFPSYNGKQFPFLHENRATSTTGSIFCESNSHYPSALGAQNSGLRPLFQDTAGNEDFNVFDTSSAVRGLSGISDSCCALSLLSSQSQNSSSQSSGIPLAHSLVIPSSHTHSHHYNMSHVSKKIGISSQTSSSRVSDSFPSELNHADGSHLSPVLISDNNDIVNYDMADDIFQGSDFLNVKDRLSGEDGATIDLLQLSSQLQRVEHERQSLQVKQENDSSCTLRIT 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1648 560 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 560 IPR044817 GO:0003677
Aed6g1648 560 SUPERFAMILY SBT domain 179 259 IPR036893 GO:0003677|GO:0005634
Aed6g1648 560 Coils Coil 528 548 - -
Aed6g1648 560 MobiDBLite consensus disorder prediction 1 26 - -
Aed6g1648 560 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Aed6g1648 560 Gene3D - 172 242 IPR036893 GO:0003677|GO:0005634
Aed6g1648 560 Pfam SBP domain 181 254 IPR004333 GO:0003677
Aed6g1648 560 PANTHER 1 PROTEIN, PUTATIVE-RELATED 44 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1648 Aed-Chr6 20340664 20346103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1648 74 335 SBP-box Gene Family AT1G69170 41.489 2.58e-53 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed6g1648 SBP 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1648 - - gmx:100817547 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1150 10 10729749 10735876 Aed6g1648 6 20340664 20346103 ECH
Aed6g1648 6 20340664 20346103 Aed6g1648 6 20340664 20346103 ECH