Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1633 ATGTCATTGTATAAAAAAAAAAATGAAGTGAAAAAAAATAAAGGGCCATATGTCAAAACACATGGCGCGAACGGTTTGCGAAAACGAAGCGCGAAGGCCCGAATTGAAAACGCAGAGCCAATTTCAATTTCCCGCCACACTCCTCGCTATACAAAAACAGTCTCTCACACTCAATATCTCTCATTTTCTGTCTCTCTATTCACTCCCATTCTTCTGTTCTCCAAAACTTGCCCTACACACTCTCTTCCAATGGCCGCCAAAATGATAACCCCCAACGCCGTTTCGATGCTCCTCGCAAACCCTAACCCCGATTCCTCATCGGATCTCCCCGACATCGTCGTTCAAGTCCTCGATCTCAAGGCTAGCGGCAACAGATACATGTTCACTGCTAACGATGGAAAATTGAAACTGAGAGCAATTATTCCTTCGAATATGGGCTCTCAGGTGCTCTCCGGGAGCATTCAAAACCTAGGTCTTATTCGCATCCTTGAGTACACTGTCAACGAACTCCCCAATAAATCTGACAAATACTTTATTGCCATTAAATGTGAAGCTGTATCTCCCGCTCTTGAATTGGAGATAAAGAGTGAGGAATCTGGATCTGGGATTCTCTTGAAGCCCAAGGTTGAGGGTGGAGTGAAGAGTGATGGCGCTGCTGGGTTTATTCTGAAGCCAAAGCAAGAAGTGGTGACAAAATCTGCTAATCAGATTCTACGTGAACAGCATGGAAATTTGGCTCCTGCTGCACGAATGGCTATGACGCGTAGGGTGCGTCCTCTTGTTTCCTTGAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGTGTTACGAGCAAAGGGAACATGCGTACATATAGGAATGCTAGGGGTGAAGGTTGTGTCTTCAATGTTGAATTGACCGATGAAGATGGTACCCAGATTCAGGCAACCATGTTTAATGATGCTGCAAGGAAATTTTTTGACAAATTTGTTTTGGGAAAGGTTTACTACATTTCAAAGGGAACTTTGAAAGTTGCTAACAAACAGTTCAAAACTGTGCAAAATGATTATGAAATGACACTTAATGAGAATTCTGAGGTGGAAGAGGTGACTGGTGAAGTCAGTTTTGTTCCAGAAACTAAGTTCAACTTTGTCCAGATTGATCAGTTGGGTCCTCATGTCAATAAGTCTGAACTTGTTGATGTTGTTGGAGTTGTTAAGAGTGTGTCTTCAACAATGAGCATTCGTAGGAAGAGTGACAACGAGAGTATTCCAAAGCGTGACATTACTATTGCTGATGAAACGAAAAAGACAGTAGTTGTGTCCTTGTGGAATGATCTTGCAACTATCACAGGACAAGAATTATTGGACATTGTTGATACATCTCCCGTTATTGCAATCAAATCTCTCAGGGTTGGGGATTTCCAAGGTGTTTCTTTGTCAACTATAAGCAGAAGTGTGGTTCTGGTAAATCCAGACATACCTGAAGCAAATAAACTCAGAAGCTGGTATGATTTTGAAGGCAAAGACACTGCAATGGACTCTGTAGGCTCGGGTTCAAGTCCAATGTCTAATATTGGAATTAGATCAGTGTACACTGATCGTATTTCACTTTCTCAGATAACCTCAAACATCTCATTGGGCGAGGGCAAGCCTGCATTTTTCAGTCTTAGAGGACATATTGTAAGCTTTATAAAGCCTGACCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAGAAAGAAAGTGACTGAAAGCGTTGGTTCGGGATATTGGTGTGAAGGATGCCAGAAAAGTGATGAACAGTGCAGTTTAAAGTACATTATGGTTGCCAAAGTCTGCGATTCAAGTGGTGAGGGTATTGTCTCCGTCTTTAATGACGAAGCTGAGAAAATCGTTGGATGCTCTGCTGATGAACTAGAAAACCTTAAATCACAAGAGGGTGAAGATAATCCTTATCAGATGACATTGAAGCAAGCTACTTGGGTTTCACATCTTTTTCGGGTTAGTGTTACCCCGAACGAGTATAACGGCGAGAAGCGTCAAAGAATAACAATTCGGGCAGTTGTTCCTGTTGACTTTGCTGCTGAGTCAAGGATCATGCTGGAAGATATATCAAAGATGATGAGAGCATAA 2115 0.4222 MSLYKKKNEVKKNKGPYVKTHGANGLRKRSAKARIENAEPISISRHTPRYTKTVSHTQYLSFSVSLFTPILLFSKTCPTHSLPMAAKMITPNAVSMLLANPNPDSSSDLPDIVVQVLDLKASGNRYMFTANDGKLKLRAIIPSNMGSQVLSGSIQNLGLIRILEYTVNELPNKSDKYFIAIKCEAVSPALELEIKSEESGSGILLKPKVEGGVKSDGAAGFILKPKQEVVTKSANQILREQHGNLAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYRNARGEGCVFNVELTDEDGTQIQATMFNDAARKFFDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVTGEVSFVPETKFNFVQIDQLGPHVNKSELVDVVGVVKSVSSTMSIRRKSDNESIPKRDITIADETKKTVVVSLWNDLATITGQELLDIVDTSPVIAIKSLRVGDFQGVSLSTISRSVVLVNPDIPEANKLRSWYDFEGKDTAMDSVGSGSSPMSNIGIRSVYTDRISLSQITSNISLGEGKPAFFSLRGHIVSFIKPDQAMWYRACKTCRKKVTESVGSGYWCEGCQKSDEQCSLKYIMVAKVCDSSGEGIVSVFNDEAEKIVGCSADELENLKSQEGEDNPYQMTLKQATWVSHLFRVSVTPNEYNGEKRQRITIRAVVPVDFAAESRIMLEDISKMMRA 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1633 704 CDD RPA1_DBD_C 531 700 IPR013955 -
Aed6g1633 704 Gene3D - 512 702 IPR012340 -
Aed6g1633 704 CDD RPA1_DBD_B 406 498 - -
Aed6g1633 704 Pfam Replication protein A OB domain 386 484 IPR031657 -
Aed6g1633 704 Pfam Replication factor-A C terminal domain 547 693 IPR013955 -
Aed6g1633 704 Pfam OB-fold nucleic acid binding domain 271 356 IPR004365 GO:0003676
Aed6g1633 704 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 89 698 - -
Aed6g1633 704 MobiDBLite consensus disorder prediction 1 16 - -
Aed6g1633 704 Pfam Replication factor-A protein 1, N-terminal domain 89 187 IPR007199 GO:0003677|GO:0005634|GO:0006260
Aed6g1633 704 Gene3D - 88 195 IPR012340 -
Aed6g1633 704 SUPERFAMILY Nucleic acid-binding proteins 258 364 IPR012340 -
Aed6g1633 704 MobiDBLite consensus disorder prediction 1 23 - -
Aed6g1633 704 Gene3D - 370 509 IPR012340 -
Aed6g1633 704 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 94 700 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aed6g1633 704 SUPERFAMILY Nucleic acid-binding proteins 525 702 IPR012340 -
Aed6g1633 704 CDD RPA1_DBD_A 259 362 - -
Aed6g1633 704 SUPERFAMILY Nucleic acid-binding proteins 375 502 IPR012340 -
Aed6g1633 704 Gene3D - 256 365 IPR012340 -
Aed6g1633 704 PANTHER REPLICATION FACTOR A 1, RFA1 89 698 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1633 Aed-Chr6 20204438 20208410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1633 89 700 Core DNA Replication Machinery Family AT5G08020 68.026 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1633 K07466 - gmx:100777091 1077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1633 6 20204438 20208410 Aed6g1633 6 20204438 20208410 ECH