Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1630 ATGGCTTTCTTTGGTAGAATTGGGAATTTGTTAAGACAGACAGCAAGCAGACAGGTTAGCTCAGAATTGCGATCATCCCCTTCCTTTTTTCAGGCTATACGCTGCATGACTTCTGCTCCAAGCACAAAGCTGTTTATAGGAGGTGTTTCGTATTCTACTGATGAGCAAAGCTTGAGGGAAGCTTTTTCAAAATATGGTGATGTTGTCGATGCTAGGATAATTATGGACCGAGAAACTGGTAGATCCAGAGGATTTGGCTTTATTACATTCACTTCGGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTGGATGGTCAGACATGGTGTGGCCTAATAATGCAGTTCTCAGTTGGGGATGATGGTATCAGGTGA 372 0.4382 MAFFGRIGNLLRQTASRQVSSELRSSPSFFQAIRCMTSAPSTKLFIGGVSYSTDEQSLREAFSKYGDVVDARIIMDRETGRSRGFGFITFTSVEEASSAIQALDGQTWCGLIMQFSVGDDGIR 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1630 123 Gene3D - 12 121 IPR012677 -
Aed6g1630 123 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 108 - -
Aed6g1630 123 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 107 IPR000504 GO:0003723
Aed6g1630 123 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 108 - -
Aed6g1630 123 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Aed6g1630 123 SUPERFAMILY RNA-binding domain, RBD 38 113 IPR035979 GO:0003676
Aed6g1630 123 SMART rrm1_1 43 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1630 Aed-Chr6 20196273 20197765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1630 42 120 Eukaryotic Initiation Factors Gene Family AT1G22760 31.646 1.30e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1630 K12741 - gmx:100799124 198.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1630 6 20196273 20197765 Aed6g1630 6 20196273 20197765 ECH