Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed6g1614 | ATGGAAGGAGATCATGATCATCGAATTCAAGAATTGAAACACGCGTGCAAGTTCTGCGGCAAGAGCTTCCCTTGTGGCAGATCCTTGGGGGGTCACATGAGGTCTCATATCACCAACTTGTCATCCGAGATGGATAATAATGAAAAGGAAAAGCTTCCAACCAGAAAGCTTTCATCTTCTCTCAACAACAATGGTGGAGTCAATGATTCTGAAGCTGCTGGCTATGGTCTCAGAGAGAACCCCAAGAAGACTTGGAGAATCTCAGATAATTCAAGTGAAGACGCTTTGGTGTTTGACAAGTTCTGCAGAGAGTGTGGCAAAGGGTTCCTCTCTTGGAAGGCCTTGTTTGGCCACATGAAATGCCACTCTGAGAAAGAGAGAGTTTTCAACAGCTTGGAAGATCAAGATTCTTGGACTAATGCTAATAAGGTGGTTATGGATATTCAATCTGATAACGAAGCAACTGCTCCAAATAAGCGAAGAAGGTCCAAGAGAAGAACAAGGTACACGGTTGCTTCTGCTTCTGCAACTGCAACAGTTGCAACTTCTTCTGTTGTGTCTTTTGCGAATAATCCTTCTAATTCTTCTATCTCTGAGGTTGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAGGGATGCGAGTCCTTGGAGTGCTCCTCATTCTGTTGCTGCTGAGTCCTCTGACAATAACTCTGCTTATTTCGAAGCTCGATCTTCAGTTCGAACTAATTTGGTCACCAAATTTGATGGCAAGAACAAGAATTTCAGTGCTAGAACAGCAAAACTGATCAAGAAAAGTGATAAGGTTGGCAATTCGGAAAATCCCAACTCAATCAGAGTCAGAGGGAAGAGTTCAATCAAGTGGGAGGTAGCTGCCACTATTACTACTGAGATTCCTGAAAATGAATTTAGAGTGAACAAAAGTGGAGTTTCCAATAAAGGGTATGAAAAGGCCAACAAGTCTGAGATTGAGTATGTGTCTGCATTGGAGGAGGATTCTGAAGCTGAACATGGGAGGAGCAGAGTCAATGAAACGGAATCAGCTACTACTGGAATCAAGTACAGTTCAATCAAGACAAAGTTTTCTGGTTCTGAATTGAAGTCAAATAAGAACTGGGTGGACATGGACAAGGCTTTGGAAGCTGAATCTAGCAAGAACTCTCATAAGAGAGGCAAGTTTGAGTGCACCACTTGCAACAAAATTTTCCACTCATACCAAGCTCTTGGAGGCCATAGAGCTAGCCATAAGAGGATCAAAGGATGCTTTGCTTCAAGGAATGAGAGCAGTGAGAACAGCATTGAAACTGATCTCTCTCCTCCTGACCCAATAACAACAACTGAAAACAATCTCATGAAGAACAACAGTGGCCGTGAGTATCCGGTGGAACATCAACAACATGGTTCTGGTTTTCACAATGACGTGAAAATAGTTGTTACTGAGTCTAAGAAAAGCAAGGGGCATGAGTGCCCAATTTGCCTCAAGGTTTTTTCATCTGGGCAAGCCTTGGGTGGACATAAGAGATCTCACATGGTTGGTGGGTCTGAAAGTAGAAACTTTCAAACACTTGTGCTTCAGGAACCAGTGGCAGAAATTAGGGACTTCCTTGATCTTAATCTTCCTGCTGCTACTACTGAGGAAGAGAGCAATAGCCATGCTGACTCTAACAGACCCTGGTGGGTAGTTGAAGACAACCACAAACAGGAGGCACTGATAGGCCTTATCTGA | 1740 | 0.4333 | MEGDHDHRIQELKHACKFCGKSFPCGRSLGGHMRSHITNLSSEMDNNEKEKLPTRKLSSSLNNNGGVNDSEAAGYGLRENPKKTWRISDNSSEDALVFDKFCRECGKGFLSWKALFGHMKCHSEKERVFNSLEDQDSWTNANKVVMDIQSDNEATAPNKRRRSKRRTRYTVASASATATVATSSVVSFANNPSNSSISEVEQEQEEVAMSLMMLSRDASPWSAPHSVAAESSDNNSAYFEARSSVRTNLVTKFDGKNKNFSARTAKLIKKSDKVGNSENPNSIRVRGKSSIKWEVAATITTEIPENEFRVNKSGVSNKGYEKANKSEIEYVSALEEDSEAEHGRSRVNETESATTGIKYSSIKTKFSGSELKSNKNWVDMDKALEAESSKNSHKRGKFECTTCNKIFHSYQALGGHRASHKRIKGCFASRNESSENSIETDLSPPDPITTTENNLMKNNSGREYPVEHQQHGSGFHNDVKIVVTESKKSKGHECPICLKVFSSGQALGGHKRSHMVGGSESRNFQTLVLQEPVAEIRDFLDLNLPAATTEEESNSHADSNRPWWVVEDNHKQEALIGLI | 579 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed6g1614 | 579 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 400 | 420 | IPR013087 | - | |
| Aed6g1614 | 579 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 100 | 127 | IPR013087 | - | |
| Aed6g1614 | 579 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 10 | 579 | - | - | |
| Aed6g1614 | 579 | Gene3D | Classic Zinc Finger | 2 | 127 | - | - | |
| Aed6g1614 | 579 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 398 | 425 | IPR013087 | - | |
| Aed6g1614 | 579 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 492 | 514 | IPR013087 | - | |
| Aed6g1614 | 579 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 14 | 36 | IPR013087 | - | |
| Aed6g1614 | 579 | SMART | c2h2final6 | 14 | 36 | IPR013087 | - | |
| Aed6g1614 | 579 | SMART | c2h2final6 | 398 | 420 | IPR013087 | - | |
| Aed6g1614 | 579 | SMART | c2h2final6 | 492 | 514 | IPR013087 | - | |
| Aed6g1614 | 579 | SMART | c2h2final6 | 100 | 122 | IPR013087 | - | |
| Aed6g1614 | 579 | SUPERFAMILY | beta-beta-alpha zinc fingers | 11 | 38 | IPR036236 | - | |
| Aed6g1614 | 579 | SUPERFAMILY | beta-beta-alpha zinc fingers | 101 | 420 | IPR036236 | - | |
| Aed6g1614 | 579 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 494 | 514 | IPR013087 | - | |
| Aed6g1614 | 579 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 102 | 122 | IPR013087 | - | |
| Aed6g1614 | 579 | MobiDBLite | consensus disorder prediction | 42 | 75 | - | - | |
| Aed6g1614 | 579 | Gene3D | Classic Zinc Finger | 395 | 514 | - | - | |
| Aed6g1614 | 579 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 16 | 36 | IPR013087 | - | |
| Aed6g1614 | 579 | Pfam | C2H2-type zinc finger | 398 | 422 | - | - | |
| Aed6g1614 | 579 | Pfam | C2H2-type zinc finger | 102 | 124 | - | - | |
| Aed6g1614 | 579 | Pfam | C2H2-type zinc finger | 492 | 515 | - | - | |
| Aed6g1614 | 579 | Pfam | C2H2-type zinc finger | 14 | 36 | - | - | |
| Aed6g1614 | 579 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 10 | 579 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed6g1614 | Aed-Chr6 | 20074339 | 20076078 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed6g1614 | 487 | 550 | C2H2 Transcription Factor Family | AT1G26610 | 64.615 | 6.46e-19 | 87.8 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Aed6g1614 | zf-C2H2_6 | 7.7e-11 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed6g1614 | - | - | gmx:102669916 | 817.764 |