Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1598 ATGGGGTGTGTGGTTGCGAAGCAGGCGGTGTCTGTGACGCCTGCGATTGAACACTCGGTTGAGTTGGAGAAGAACAGCAGGAAGAAGAAGACTGAGTCAGTGAGTAGGAGCGAGTTGGGTGAGTCGGGGAGAGCGAGTTCCAATGGTGGAAGTGAGTCTCTGAGCTTCAGGTTGGGGAACCTGAGCAAGTACGTGGAGGGAGAGCAGGCGGCGGCGGGGTGGCCGGCGTGGCTCAGCGCCGTCGCGTCTGAGGCCATTCACGGTTGGGTGCCTCTTCGTCCTGACGCATTCGAGAAACTTGACAAGATTGGGCAGGGTACATATAGTAGTGTTTTCCGAGCGAAAGAGATTGAGACCGGGAAGATAGTGGCTTTGAAGAAGGTGAGGTTTGACAATTTTGAGCCAGAGAGTGTGAGGTTTATGGCACGAGAAATAATGATTCTTAGGAGGCTTGATCATCCAAACATCATTAAACTGGAGGGCTTGATTACTTCTAGATTGTCTTGTAGCATATACCTTGTGTTTGAATACATGGAGCACGACATCACAGGGCTCTTGTCTAGACCAGAAATCAAGTTCAGTGAATCACAGATCAAATGCTACATGAAACAGTTGTTATCTGGTCTTGAGCATTGTCACTCGAGGGGTGTGATGCACAGGGACATCAAAGGATCAAATCTTTTGGTGAACAATGAAGGGATATTGAAGGTGGCAGATTTTGGATTGGCAAATTTCACCAATTTAGGGAACAAGCAGCCCCTCACTAGTCGTGTTGTCACCTTATGGTATCGTCCTCCGGAGCTTTTGCTCGGTTCAACAGCTTATGGTGCATCCGTGGATCTCTGGAGTGTTGGCTGTGTATTTGCAGAATTACTAATTGGGAAACCTATACTTCAGGGGAGAACTGAGGTTGAGCAATTGCACAAAATTTTCAAGCTTTGTGGTTCCCCACCCGAAGAATACTGGAAAAAGACCAAACTTCCTCATGCAACATTGTTCAAGCCACAGCAACCATATGATAGTTGCCTACGAGAGACATTTAAAGATTTTCATGCATCCAGTGTAAATCTTCTACAAACTCTTCTTTCTGTCGAACCAAGCAAACGTGGGACTGCCTCCTCTGCTCTCTCATTGGAGTATTTCAAAACAAAACCTTATGCATGTGATCCATCAAGTTTGCCAACATACCCACCTAGCAAGGAGATTGATGCAAAACATGAGGAGGAGTCAAGAAGGAAAAAGATTGGTGGGAGAGCTTGCAGACCAGAATCCAGAAAACCATCAAGAAAGCCACTAGCACTGAGTAAATTAGCCCCAGCAGAGGATTTGACAAGTCAAACTCAAACTTCACAAAAGATGGATGATAGATCAGTCCACATCATTAAAGAAGAGAACACTAACACATGTGAGGAGGCACCAAAGCAATCTAGTGGTAAACCAGAAGATGATTCTTCTTATATGAAGAATGCATCATCTCAAGTAGATATTCCCTTTCCTGGACCATTGCAAGTTTCAAAATCAAGTGGCTTTGCATGGGCAAAAAGGCGTAAAGATGACACTTCAGCTAGATCACACAGCCGGTCTATTTCTAGAGGATATATCCTTAATTCATTAGAAACTTCTACACTAAACTCAAGGAACAATTCTGAATCCAGAAACCATGAAAATAAGGAATTTTTTGGGGCACGCACCAACTCTAGGGGCCAGGACCTACTAGAAATATCTAAGCTTGCCATGCAAAATCAATGGAGCAAGTTTGATCGTCCAGATTCATTTGATACTTGTGACGAGTACCATTCACAAGAACTGTCCATGGCACTTTATAACAGACAAGATTCACTATCCAAGAGAAGTAACCTGAGTTACCAGGATCAAGCAGAAAAGGTTGAGTTTTCAGGGCCTCTACTATCTCAAATGCACACAGTTGATGAGCTCTTAGAAAGACATGAGCGACATATTCGGCGTACTGTCAGAAGATCATGGTTTCAGAGAGGTAAGAAGCAAGGGAAGTAA 2013 0.4451 MGCVVAKQAVSVTPAIEHSVELEKNSRKKKTESVSRSELGESGRASSNGGSESLSFRLGNLSKYVEGEQAAAGWPAWLSAVASEAIHGWVPLRPDAFEKLDKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSRPEIKFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFTNLGNKQPLTSRVVTLWYRPPELLLGSTAYGASVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKTKLPHATLFKPQQPYDSCLRETFKDFHASSVNLLQTLLSVEPSKRGTASSALSLEYFKTKPYACDPSSLPTYPPSKEIDAKHEEESRRKKIGGRACRPESRKPSRKPLALSKLAPAEDLTSQTQTSQKMDDRSVHIIKEENTNTCEEAPKQSSGKPEDDSSYMKNASSQVDIPFPGPLQVSKSSGFAWAKRRKDDTSARSHSRSISRGYILNSLETSTLNSRNNSESRNHENKEFFGARTNSRGQDLLEISKLAMQNQWSKFDRPDSFDTCDEYHSQELSMALYNRQDSLSKRSNLSYQDQAEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKQGK 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1598 670 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 29 663 - -
Aed6g1598 670 MobiDBLite consensus disorder prediction 455 469 - -
Aed6g1598 670 Pfam Protein kinase domain 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1598 670 Gene3D Transferase(Phosphotransferase) domain 1 180 420 - -
Aed6g1598 670 MobiDBLite consensus disorder prediction 391 500 - -
Aed6g1598 670 MobiDBLite consensus disorder prediction 22 37 - -
Aed6g1598 670 MobiDBLite consensus disorder prediction 470 498 - -
Aed6g1598 670 Gene3D Phosphorylase Kinase; domain 1 85 179 - -
Aed6g1598 670 MobiDBLite consensus disorder prediction 22 52 - -
Aed6g1598 670 MobiDBLite consensus disorder prediction 400 430 - -
Aed6g1598 670 PANTHER CELL DIVISION PROTEIN KINASE 29 663 - -
Aed6g1598 670 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Aed6g1598 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Aed6g1598 670 ProSiteProfiles Protein kinase domain profile. 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1598 670 MobiDBLite consensus disorder prediction 440 454 - -
Aed6g1598 670 SUPERFAMILY Protein kinase-like (PK-like) 91 388 IPR011009 -
Aed6g1598 670 SMART serkin_6 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1598 670 MobiDBLite consensus disorder prediction 38 52 - -
Aed6g1598 670 CDD STKc_CDK9_like 97 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1598 Aed-Chr6 19974730 19980427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1598 95 413 Core Cell Cycle Gene Families AT5G10270 52.537 1.38e-115 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed6g1598 Pkinase 1.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1598 - - gmx:100784406 1235.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1076 10 9693455 9700180 Aed6g1598 6 19974730 19980427 ECH
Aed6g1598 6 19974730 19980427 Aed6g1598 6 19974730 19980427 ECH