Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1585 ACTCAGCTAGCAGCATCTATTTATTCCCCACCTAGGCCTTCTGCTTTTAATTTCCTCACAACTTCTCTGCTTCCTTTCCACCCTCTCTATCGAGGAAACATGGTGTTTTTGGGTGTTCTCTTGGTGGGGTTTCTCTTAGGTGCTTATGGGGACACTGATGGTTGGATGGATGCTCATGCTACCTTCTATGGAGGTGGTGATGCCTCTGGCACAATGGGTGGAGCTTGTGGATATGGAAACCTCCATAGCCAGGGCTATGGGACTAACACTGCTGCTTTGAGCACAAGCTTGTTCAACAATGGTTTGAGCTGTGGGGCTTGTTTCGAAATCAAGTGTGCGAATGATCAAAGGTGGTGCCTTTCAGACTCAGTTGTGGTCACTGCCACCAATTTCTGTCCACCAAACAATGCCCTCCCAAATGATGCAGGTGGCTGGTGCAACACTCCCCTTCAACATTTTGATCTCTCTCAGCCTGTCTTCCAACAAATAGCTCAATACAGTGCTGGCATAGTACCTGTTGCTTACAGAAGGGTCCCATGTGAAAAGAGAGGAGGCATGAGGTTCACCATCAATGGTCATTCTTATTTCAACCTAGTCCTAATAACCAACGTTGGTGGTGCTGGTGATGTTCAAGCAGTTTCAATCAAAGGTTCAAGAACTAATTGGCAACCTATGTCCAGAAACTGGGGTCAGAACTGGCAAAGCAACACGTACCTCAATGAACAAAGCCTCTCCTTTAAGGTTACCACCAGCGACGGCCGCACCTCGGTCTCTTATAATGTTGCCCCTCATAGCTGGTCCTTTGGCCAGACCTTCACAGGGCAACAATTCAATTAA 837 0.4743 TQLAASIYSPPRPSAFNFLTTSLLPFHPLYRGNMVFLGVLLVGFLLGAYGDTDGWMDAHATFYGGGDASGTMGGACGYGNLHSQGYGTNTAALSTSLFNNGLSCGACFEIKCANDQRWCLSDSVVVTATNFCPPNNALPNDAGGWCNTPLQHFDLSQPVFQQIAQYSAGIVPVAYRRVPCEKRGGMRFTINGHSYFNLVLITNVGGAGDVQAVSIKGSRTNWQPMSRNWGQNWQSNTYLNEQSLSFKVTTSDGRTSVSYNVAPHSWSFGQTFTGQQFN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1585 278 Pfam Expansin C-terminal domain 186 263 IPR007117 -
Aed6g1585 278 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Aed6g1585 278 PRINTS Expansin/Lol pI family signature 260 274 IPR007118 GO:0005576
Aed6g1585 278 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Aed6g1585 278 PRINTS Expansin/Lol pI family signature 94 112 IPR007118 GO:0005576
Aed6g1585 278 PRINTS Expansin/Lol pI family signature 54 69 IPR007118 GO:0005576
Aed6g1585 278 PRINTS Expansin/Lol pI family signature 168 184 IPR007118 GO:0005576
Aed6g1585 278 Pfam Lytic transglycolase 90 175 IPR009009 -
Aed6g1585 278 PANTHER EXPANSIN-A15 36 278 IPR002963 GO:0009664
Aed6g1585 278 SUPERFAMILY Barwin-like endoglucanases 42 203 IPR036908 -
Aed6g1585 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 73 185 IPR007112 -
Aed6g1585 278 SMART dpbb_1 90 175 IPR007112 -
Aed6g1585 278 Gene3D - 47 181 IPR036908 -
Aed6g1585 278 SUPERFAMILY PHL pollen allergen 182 274 IPR036749 -
Aed6g1585 278 PRINTS Expansin signature 112 123 IPR002963 GO:0009664
Aed6g1585 278 PRINTS Expansin signature 143 160 IPR002963 GO:0009664
Aed6g1585 278 PRINTS Expansin signature 160 173 IPR002963 GO:0009664
Aed6g1585 278 PRINTS Expansin signature 196 217 IPR002963 GO:0009664
Aed6g1585 278 PRINTS Expansin signature 184 196 IPR002963 GO:0009664
Aed6g1585 278 PRINTS Expansin signature 85 99 IPR002963 GO:0009664
Aed6g1585 278 PRINTS Expansin signature 124 134 IPR002963 GO:0009664
Aed6g1585 278 PRINTS Expansin signature 260 276 IPR002963 GO:0009664
Aed6g1585 278 PRINTS Expansin signature 231 252 IPR002963 GO:0009664
Aed6g1585 278 Gene3D - 185 277 IPR036749 -
Aed6g1585 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 195 274 IPR007117 -
Aed6g1585 278 PANTHER EXPANSIN 36 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1585 Aed-Chr6 19861531 19863648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1585 29 277 Expansin Gene Family AT2G03090 75.397 7.65e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1585 - K20628 gmx:100816718 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0376 3 2674870 2676765 Aed6g1585 6 19861531 19863648 ECH
Aed11g0377 11 3196980 3199480 Aed6g1585 6 19861531 19863648 ECH
Aed6g1585 6 19861531 19863648 Aed6g1585 6 19861531 19863648 ECH