Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1584 ATGAAGAGGTTTTCGAACGGTCCTTCAGTGGTGACGTCGACCTCGCCTTTCTTCTCCTTTCTTCTCTGCTACTCGCACCAGAACTACCTCTCATTTCGCTTATCCTCCACCTTATCCCCTATCAAAATGTATCTCACACCTTCACCTTTTTTCAACATTTTCCAATACATTATCACAACAAGGATGGGAAGAGTTAAATTGAAGATCAAGAAATTAGAAAGCATAAGCAATCGACATGTGACTTATTCAAAGCGAAAAAGCGGAATTATAAAGAAAGCAAAGGAGTTATCAATACTATGTGATATAGATATTGTCCTTCTTATGTTTTCTCCAACGGGAAAACCTACATTACTACAAGGAGAACGCGGCAATATTGAGGAGGTTATTACAAAATTTTCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAGAGCCTTGAAGCACTAAAGAAAACCTTTAAGAAGTTGGACCATGACGTAAAAATACAAGATTTCTTAGGTTCAAGCAGTCAAACAATGGGGGAATTATCTCACCAAGTAAATGCTTTACAAGCTCAGATCACAGAAGCACAAGAGAGACTGAGCTATTGGAATAATCTAGAGAAGACCCATAACTTAGAACATCTTAGGCAAATGGAAGACTCACTACGAGAATCAATCAATCGAGTAGGCCTACACAAAGAAAATTTAGGAAAACACCAACTCATGTCACTTGAATGTGCTAACCAGGTAGCAAATGTCGTATTTGATAATACCAATAGAGATGTTGAGTGCTCAAATGACATTTCACTCCCAAACTATTCTGGTTATATTGGGAGCAACAAACTTGAAGTTGGTAACTCTCCCCAAGTAACTAATTTGGGTCAAGGAGGTGGTGCCATGAATGAGTTAAATGGAACAACTTACTTAAATGTACAACGTTGTGACCAGTTTGCATACCCTCCTCCTCCGCCAGATATTGGCCAGGAAGTGAAACATTTCCCTACAATGGACAGTAGTAAATCGAACACTGTGGATTTCCAAGTTAATAACAACTTTGATCTCCCAAGATCATTGTTTGAAAATGGACATCAGTTTTGGAATTCTGCTTCTGGGTCTTGTGGGATAGCCATTGAGAAGAATGCTAGCAAATCATCTCCACAAAAACCAATGCTATGA 1164 0.39 MKRFSNGPSVVTSTSPFFSFLLCYSHQNYLSFRLSSTLSPIKMYLTPSPFFNIFQYIITTRMGRVKLKIKKLESISNRHVTYSKRKSGIIKKAKELSILCDIDIVLLMFSPTGKPTLLQGERGNIEEVITKFSQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTMGELSHQVNALQAQITEAQERLSYWNNLEKTHNLEHLRQMEDSLRESINRVGLHKENLGKHQLMSLECANQVANVVFDNTNRDVECSNDISLPNYSGYIGSNKLEVGNSPQVTNLGQGGGAMNELNGTTYLNVQRCDQFAYPPPPPDIGQEVKHFPTMDSSKSNTVDFQVNNNFDLPRSLFENGHQFWNSASGSCGIAIEKNASKSSPQKPML 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1584 387 Coils Coil 175 202 - -
Aed6g1584 387 Gene3D - 75 158 IPR036879 GO:0003677|GO:0046983
Aed6g1584 387 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 72 116 IPR002100 GO:0003677|GO:0046983
Aed6g1584 387 PRINTS MADS domain signature 99 120 IPR002100 GO:0003677|GO:0046983
Aed6g1584 387 PRINTS MADS domain signature 64 84 IPR002100 GO:0003677|GO:0046983
Aed6g1584 387 PRINTS MADS domain signature 84 99 IPR002100 GO:0003677|GO:0046983
Aed6g1584 387 SMART madsneu2 62 121 IPR002100 GO:0003677|GO:0046983
Aed6g1584 387 Coils Coil 138 158 - -
Aed6g1584 387 ProSiteProfiles MADS-box domain profile. 62 114 IPR002100 GO:0003677|GO:0046983
Aed6g1584 387 CDD MADS_SRF_like 63 145 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aed6g1584 387 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 62 247 - -
Aed6g1584 387 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 255 372 - -
Aed6g1584 387 PANTHER SERUM RESPONSE FACTOR HOMOLOG 62 247 - -
Aed6g1584 387 PANTHER SERUM RESPONSE FACTOR HOMOLOG 255 372 - -
Aed6g1584 387 SUPERFAMILY SRF-like 63 156 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1584 Aed-Chr6 19857320 19860925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1584 62 300 Type I MADS-box Gene Family AT2G03060 48.727 5.76e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed6g1584 SRF-TF 2.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1584 - - gmx:100787065 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1584 6 19857320 19860925 Aed6g1584 6 19857320 19860925 ECH