Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed6g1566 | ATGGGATCAGAGAGTGTGGCTCCAATGGTTGAGACATCAAAAAACAGGTCTTCTTCGGGTAAAACGAACCAAGGGAAAGTTCCCAGGAAAATTCACAAGGCTGAAAGGGAGAAAATGAAGCGTGAGCATTTGAATGACCTATTTCTTGATCTTGCCAATGTTCTTGATCTAAATGAGAACAATGGAAAGGCTTCTATACTGTGTGAAACTGGCAGGTTGCTAAAAGACTTGCTCAGTCAGATCGAGTCCCTCAAGAAAGAGAATGACACTCTGTTGTCTGAATCTCATTATATGACCATGGAGAAAAATGAGCTGAAGGAGGAGAAGTGTAGCCTAGAAACTCAAATTGAGAAACTTCAAGGTGAGATACAGGCAAGACTGGCTCAATCTAAACCTGACCTTAATGTACCTCCCCATATGGAACTTGAGCCACTGGAGCAGACAAATTTTCCAGGACAGAATCTCCAATTACATACCATAGAACCTAACATGCAGCAAGGATCTGCAGTTTTTGTTGTTCCCTTTCGCCCTGATCTTCAAGCTTCTTTTCCGGCTCCTAATGTTGCCGAGGTCACGCTGAAATCTACTTCTGTTGTTGTCAGTAAACCACATGCCAGGTATCCCAAACCAACAGATTCATGGCCATCACAGCTGCTTGGAGAGCAACCAACTTCAAGTTAA | 681 | 0.4317 | MGSESVAPMVETSKNRSSSGKTNQGKVPRKIHKAEREKMKREHLNDLFLDLANVLDLNENNGKASILCETGRLLKDLLSQIESLKKENDTLLSESHYMTMEKNELKEEKCSLETQIEKLQGEIQARLAQSKPDLNVPPHMELEPLEQTNFPGQNLQLHTIEPNMQQGSAVFVVPFRPDLQASFPAPNVAEVTLKSTSVVVSKPHARYPKPTDSWPSQLLGEQPTSS | 226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed6g1566 | 226 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 29 | 104 | IPR036638 | GO:0046983 | |
| Aed6g1566 | 226 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Aed6g1566 | 226 | Coils | Coil | 102 | 122 | - | - | |
| Aed6g1566 | 226 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Aed6g1566 | 226 | Coils | Coil | 74 | 94 | - | - | |
| Aed6g1566 | 226 | PANTHER | TRANSCRIPTION FACTOR BHLH47 | 5 | 225 | - | - | |
| Aed6g1566 | 226 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 28 | 77 | IPR011598 | GO:0046983 | |
| Aed6g1566 | 226 | MobiDBLite | consensus disorder prediction | 201 | 226 | - | - | |
| Aed6g1566 | 226 | Gene3D | - | 20 | 94 | IPR036638 | GO:0046983 | |
| Aed6g1566 | 226 | PANTHER | TRANSCRIPTION FACTOR BHLH47 | 5 | 225 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed6g1566 | Aed-Chr6 | 19733718 | 19737263 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed6g1566 | 15 | 222 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G47640 | 47.345 | 5.46e-58 | 182 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed6g1566 | - | - | gmx:100809240 | 389.808 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aed10g1036 | 10 | 9147024 | 9149518 | Aed6g1566 | 6 | 19733718 | 19737263 | ECH | |
| Aed6g1566 | 6 | 19733718 | 19737263 | Aed6g1566 | 6 | 19733718 | 19737263 | ECH |