Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1560 ATGGGAAATTGCTGTGGAGCTCGTTGCAAGGTTGATGACACTTTGAACTCCAGTTCTGATGTTAGCAAAGTTCAGCGTAGAAGCACCCATTTGTTCCTTAATACAAATCCAAACGGGCTTGGATACACTGATGAAAGAAAACCTGAGATTCTCCCCACTCCAAGATCTGAATGGGACATACTTTCATCCCCACATTTAAAACCCTTCACATTGCATGATCTTAAGAAGGCCACTAGAAATTTCCAACCTGATAGTCTAATTGGAGAAGGTGGATTTGGTTATGTCTATAAGGGGTTGATTAGTGATGCTAAATCCTTTGGTGCTACAACTCCTAAGTCTGCAAAGGTTGTAGCTGTGAAGCAGCTTAAGCCTCAAGAGGACACACAACCACTTCCTTGGGCAACAAGAGTCAAGATTGCTATTGGTGCTGCTCGAGGTCTTTCCTTCCTACATGACTCTAAGCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATTTTGTTAGATTCGGAATTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGCCCCACTGGTGATCATTCTCATGTTTCCACTCAAGTCGTGGGAACTCATGGCTATGCTGCTCCTGAATATATTGCTACAGAAGGGCAATACCCACAGAGAGCAGCTTATACAGTTGCAATTATTGCATTACAATGCATTAGTGAGGCCAAGACTAGACCAAGGACGTTTGAGGTTTTGGCTGCCTTGGAACACCTTCCAACCATTAGACATTCAGCTACTCCATCTGGAGAAGACAAGTCCATGACAAGTCCCATCAGAGAGGCTCCAAGTCCTGTGGCCTTCCTGAATCTGCCTTCCAACTTCTTTTGGTTCAAGGAAATCATAAGGGGTGCCCTTAACAGATATGATTTCTCCAGTGGGGATGAGAAGCTTGTCCACTGGTGTGATGACTCCACTGACCATACAACATCACTGAAACCTCTTGTACCACCTGATATTTCAAATGTTAATAGCAATTTCGTCAATGATTAA 1029 0.4315 MGNCCGARCKVDDTLNSSSDVSKVQRRSTHLFLNTNPNGLGYTDERKPEILPTPRSEWDILSSPHLKPFTLHDLKKATRNFQPDSLIGEGGFGYVYKGLISDAKSFGATTPKSAKVVAVKQLKPQEDTQPLPWATRVKIAIGAARGLSFLHDSKQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDHSHVSTQVVGTHGYAAPEYIATEGQYPQRAAYTVAIIALQCISEAKTRPRTFEVLAALEHLPTIRHSATPSGEDKSMTSPIREAPSPVAFLNLPSNFFWFKEIIRGALNRYDFSSGDEKLVHWCDDSTDHTTSLKPLVPPDISNVNSNFVND 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1560 342 SUPERFAMILY Protein kinase-like (PK-like) 66 244 IPR011009 -
Aed6g1560 342 Pfam Protein kinase domain 138 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1560 342 PANTHER OS01G0588500 PROTEIN-RELATED 128 212 - -
Aed6g1560 342 PANTHER OS01G0588500 PROTEIN-RELATED 22 125 - -
Aed6g1560 342 ProSitePatterns Protein kinases ATP-binding region signature. 87 120 IPR017441 GO:0005524
Aed6g1560 342 Gene3D Phosphorylase Kinase; domain 1 44 128 - -
Aed6g1560 342 PANTHER OS01G0588500 PROTEIN-RELATED 213 267 - -
Aed6g1560 342 Gene3D Transferase(Phosphotransferase) domain 1 129 273 - -
Aed6g1560 342 PANTHER BNAC02G17010D PROTEIN 213 267 - -
Aed6g1560 342 PANTHER BNAC02G17010D PROTEIN 128 212 - -
Aed6g1560 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Aed6g1560 342 ProSiteProfiles Protein kinase domain profile. 1 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1560 342 PANTHER BNAC02G17010D PROTEIN 22 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1560 Aed-Chr6 19692559 19696710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1560 69 240 Glycoside Hydrolase AT3G07070 38.565 1.32e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aed6g1560 Pkinase 2.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1560 - - ini:109166344 236.113