LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g1558	ATGGCAAATCCTGCTCCTGCGAGCTTCTGGACTCAAGCAAACGCGCTTTTACGCAAGAATCTAACCTTCCAGAAACGGAACGTGAGAACAAACGTTAAGCTGGTACTGTTCCCGGTGTTCATGTGCTTGCTGCTTTTCGCGATCCAACTCTTAATCGACTCGCAACTCGGTGGGCCCGCCTACAAATGCGGCTGCGGCTGCGCCAACAGAACCGTTACCGAAGAAGAGTCAGAGTGCCCTGGATCGGAGAAGAAGTGTGGGGTCCAGTATTCCGATCCCACACAAGCTTTAGCATGCGTCATTCCGAACCCCATCGAGTGGCCACCGCTCTTGCAGCTTCCGGCTCCGGCGAGCCGCGCCGTGCGAACCCCTTCTCTTCCCTTTTCCGATTTGCTCGATGCCTCCTGCAGGAGAACCGACTCGTGTCCTCTTACTCTGCTCTTTACCGCACAGAATTACTCCTTTGCGAAAACTGTGTCTGCAACTATGTTTGGGAGTGCCTTGAGTAAAATTGACTCTGGTAGTGATTTCTTGGCTAGTTTGGCCATGAATGTACTGGGATCTGAAACAACGCCCGAGAACAACAATTTTATTGAAACTGCTTTCTCTTCACATCTCCCCATTTATTATCTTCAAGCAAAGTGCACAGACACAGAGAAATCTGGATTCCCCTTACCCTCCCTGTCGGCAGCAGACAATGACATAGGACAAGGGCTTGCAATCAAATGTGCTCAGGCTATAAATTTATGGCGTAATAGTTCTTCTGTGATCAACAGTGAACTATATAAAGGTTATCAAAGAGGTAACGCAGATGGACAACTCAATGAGATAGTTTCAGCTTTTGATTTCCTAAATTCAAATGGGAATAGATATAATGTCAGTATATGGTACAACTCAACCTACAAGGAAGACACTGGATTTAGTAGTAATAGGTTGTTGCGGATTCCTCGCTCTATAAATCTGATATCAAATTCCTACCTGCAGTTTCTGCTTGGACCTGGAACCAAAATGTTATTTGAGTTTGTAAAGGAAATGCCAAAGCCTGAGACCAGCTTAAGGCTTGAGATATCTTCTCTTCTGGGCACTCTAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCATATGGTTATTTTCTTGCCATATCAATAATCTACATGTTGTGTTTTGTGATATTTGGCTCACTCTTAGGATTAAAATTCTTCACAATAAATGACTACAGCATCCAATTTGTGTTTTATTTCATCTTTATAAACTTACAAATTGCGCTGGCATTTTTTGTGGCTTCCCTATTTTCAAATGTTAAGACTGCTACAGTAACTACATATATAGGTGTCTTTGGAACCGGGTTATTAGGAGGCTATCTTTTCCAATTCTTTGTTCAAAATACATCATTTCCAAGAGGGTGGATAATTGTTATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGGGTTATATGAGTTAGCACAATTTTCCTTTGTAGGGAGTAGCTCAGGGACTGGTGGTATGAAGTGGCAGAATTTGAGTGAAAGCCCCAATGGCATGAAAGAGGTCTTAATTATCATGTTTGTTGAGTGGATAGTGATGCTTTTCTTTGCCTTCTACATTGACCAAAAGGAGAAGGTGGAGCAACTGCTACTTGAACCAACTATTAATCATGCAATTATATGTGACGACCTAAAAAAAGTCTATCCAGGGAGGGATGGAAATCTAGATAAATTTGCAGTGAGAGGGTTGTTCCTTTCTGTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGAGCTGGGAAGACCTCTTTTATCAATATGATGGTTGGTCTCACAAAGCCAACCTCTGGTACGGCATTTGTTCAAGGCTTGGACATAAGAACTCAAATGGATGGAATATATACTACCATGGGAGTTCCTGATAAACAAGTTGGAAAATACAGTGGAGGCATGAAGAGGAGGCTTAGTGTTGCAATTTCTTTGATTGGGGATCCCAGAGTTGTTTACATGGATGAACCAAGTTCCGGGTTAGATCCTGCCTCAAGAAAAAGCTTATGGAATGTTGTCAAGCATGCAAAACAGAACCGTGCAATTATTCTCACCACACATTCCATGGAAGAGGCAGAGGCCTTATGTGACCGATTGGGAATATTTGTAAATGGTAGCCTGCAGTGTGTAGGAAATGCAAAGGAGCTGAAAGCAAGATATGGAGGAACTTACGTGTTCACAATGACAACATCTCAAGACCATGAAAATGATGTGGAGAACATGGTGCAGAAACTGACCCCAAATGCCAAAAAGACATACCATCTCTCTGGTACTCAGAAGTTTGAGCTTCCAAAAGAGAATGTTAGAATAGCAGATGTATTCCAAGCTGTTGATGCTGCAAAGAGAAACTTCACTGTTTCTGCATGGGGTTTAGTTGACACCACATTGGAAGATGTATTCATTAAGGTAGCAAGTGAGGGTCAGGCATTTGACACCTTGTCATAA	2505	0.4275	MANPAPASFWTQANALLRKNLTFQKRNVRTNVKLVLFPVFMCLLLFAIQLLIDSQLGGPAYKCGCGCANRTVTEEESECPGSEKKCGVQYSDPTQALACVIPNPIEWPPLLQLPAPASRAVRTPSLPFSDLLDASCRRTDSCPLTLLFTAQNYSFAKTVSATMFGSALSKIDSGSDFLASLAMNVLGSETTPENNNFIETAFSSHLPIYYLQAKCTDTEKSGFPLPSLSAADNDIGQGLAIKCAQAINLWRNSSSVINSELYKGYQRGNADGQLNEIVSAFDFLNSNGNRYNVSIWYNSTYKEDTGFSSNRLLRIPRSINLISNSYLQFLLGPGTKMLFEFVKEMPKPETSLRLEISSLLGTLIMMKMHGLGDGPYWMISYGYFLAISIIYMLCFVIFGSLLGLKFFTINDYSIQFVFYFIFINLQIALAFFVASLFSNVKTATVTTYIGVFGTGLLGGYLFQFFVQNTSFPRGWIIVMELYPGFALYRGLYELAQFSFVGSSSGTGGMKWQNLSESPNGMKEVLIIMFVEWIVMLFFAFYIDQKEKVEQLLLEPTINHAIICDDLKKVYPGRDGNLDKFAVRGLFLSVPQGECFGMLGPNGAGKTSFINMMVGLTKPTSGTAFVQGLDIRTQMDGIYTTMGVPDKQVGKYSGGMKRRLSVAISLIGDPRVVYMDEPSSGLDPASRKSLWNVVKHAKQNRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKARYGGTYVFTMTTSQDHENDVENMVQKLTPNAKKTYHLSGTQKFELPKENVRIADVFQAVDAAKRNFTVSAWGLVDTTLEDVFIKVASEGQAFDTLS	834

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g1558	834	Gene3D	-	557	639	IPR027417	-
	Aed6g1558	834	CDD	ABC_subfamily_A	561	737	-	-
	Aed6g1558	834	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	553	750	IPR027417	-
	Aed6g1558	834	SMART	AAA_5	591	726	IPR003593	-
	Aed6g1558	834	ProSitePatterns	ABC transporters family signature.	651	665	IPR017871	GO:0005524
	Aed6g1558	834	PANTHER	ABC TRANSPORTER A FAMILY PROTEIN	364	544	-	-
	Aed6g1558	834	PANTHER	ABC TRANSPORTER A FAMILY PROTEIN	545	644	-	-
	Aed6g1558	834	PANTHER	ABC TRANSPORTER A FAMILY PROTEIN	642	834	-	-
	Aed6g1558	834	PANTHER	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	364	544	IPR026082	GO:0016021\|GO:0055085\|GO:0140359
	Aed6g1558	834	PANTHER	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	6	363	IPR026082	GO:0016021\|GO:0055085\|GO:0140359
	Aed6g1558	834	PANTHER	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	545	644	IPR026082	GO:0016021\|GO:0055085\|GO:0140359
	Aed6g1558	834	PANTHER	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	642	834	IPR026082	GO:0016021\|GO:0055085\|GO:0140359
	Aed6g1558	834	Pfam	ABC transporter	586	632	IPR003439	GO:0005524
	Aed6g1558	834	Pfam	AAA domain, putative AbiEii toxin, Type IV TA system	650	709	IPR003959	GO:0005524\|GO:0016887
	Aed6g1558	834	Gene3D	-	640	781	IPR027417	-
	Aed6g1558	834	PANTHER	ABC TRANSPORTER A FAMILY PROTEIN	6	363	-	-
	Aed6g1558	834	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	561	749	IPR003439	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g1558	Aed-Chr6	19682873	19690774	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g1558	565	760	Calmodulin-binding Proteins	AT2G36910	22.530	5.41e-10	61.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed6g1558	6	19682873	19690774	Aed6g1558	6	19682873	19690774	ECH