Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1540 ATGGCGGGTGGAAGAGCCTTTTCCAACATCACTACTTTCCTCAGCAACAACCAACCCTCTTCCCAACCTCTCCACAATTCTCTCTTCCTCTCTGCACCTTCCTCTGCTCCTTTCCTAGGTTCGAGATCCATGATGAGTTTCGAAGGAGGGAAGGGCTCCTTCTTCAGCGCGTTTGACATGGACGAGAACGGAGACGAGTGCATGGACGAGTACTTTCACCAACCTGAGAAGAAGCGTCGTCTCTCTCTGAACCAGGTTCAGTTTCTCGAGAAGAGCTTCGAGGAAGAGAACAAGCTCGAACCCGAGAGAAAAACCAAACTTGCAAAAGACCTTGGCTTGCAGCCACGGCAAGTTGCTATTTGGTTCCAGAACCGTCGTGCTCGCTGGAAGACCAAACAGCTCGAGAAGGATTACGACACTCTGCATGCGAGTTTTGAGACTCTCAAATCCAACTATGACAACCTCCTCAAGGAAAAAGACAAGCTAAAATCCCAGGTGGCGAGCCTCACTGAGAAGGTGCTTGCGAGAGGGAAACAAGAGGAGGGGCAGTTGAAGAAACAGCAGGGTGAAAGTGAAGAAGAAACAAAGGAACAGGAACAGGAACCAGTTTCGGAGGGTGAAGGATCCAAAGTCTGTTGTAAACAAGAAGATATCAGTTCAGCGAGGAGTGACATTTTGGATTCGGATAGTCCACATTACACGGATGGAGTCAACTCTGCGGCTCTGGAACACGGTGATCATTCTTCTTATGTGTTTGAGCCTGATCAATCTGACATGTCACAAGACGACGAAGAAGATAACCTCAGCAAGAGTCTCTACCCTTCGTACCTCTTTCCCAAACTTGAAGAAGATGTGGATTACTCCGACCACCCTCAAAGTTCTTGTAATTTTGGATTTCCTGATGAGGAGGAAGATCACGCCCTTTGGACCTGGCCTTACTAA 942 0.483 MAGGRAFSNITTFLSNNQPSSQPLHNSLFLSAPSSAPFLGSRSMMSFEGGKGSFFSAFDMDENGDECMDEYFHQPEKKRRLSLNQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDTLHASFETLKSNYDNLLKEKDKLKSQVASLTEKVLARGKQEEGQLKKQQGESEEETKEQEQEPVSEGEGSKVCCKQEDISSARSDILDSDSPHYTDGVNSAALEHGDHSSYVFEPDQSDMSQDDEEDNLSKSLYPSYLFPKLEEDVDYSDHPQSSCNFGFPDEEEDHALWTWPY 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1540 313 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Aed6g1540 313 Coils Coil 145 172 - -
Aed6g1540 313 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Aed6g1540 313 MobiDBLite consensus disorder prediction 178 193 - -
Aed6g1540 313 SUPERFAMILY Homeodomain-like 59 134 IPR009057 -
Aed6g1540 313 Pfam Homeodomain 77 130 IPR001356 GO:0003677
Aed6g1540 313 Pfam Homeobox associated leucine zipper 132 173 IPR003106 GO:0006355|GO:0043565
Aed6g1540 313 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
Aed6g1540 313 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
Aed6g1540 313 Gene3D - 127 175 - -
Aed6g1540 313 MobiDBLite consensus disorder prediction 178 273 - -
Aed6g1540 313 Gene3D - 80 126 - -
Aed6g1540 313 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 17 310 - -
Aed6g1540 313 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 310 IPR045224 GO:0003700
Aed6g1540 313 CDD homeodomain 77 133 IPR001356 GO:0003677
Aed6g1540 313 SMART HOX_1 75 136 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1540 Aed-Chr6 19577485 19579267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1540 40 239 Homeobox Transcription Factor Family AT3G01470 48.276 9.36e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed6g1540 Homeodomain 3.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1540 - - gmx:100799054 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1540 6 19577485 19579267 Aed6g1540 6 19577485 19579267 ECH