Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1528 ATGCCGCTCTCTAACGCGAACCTCTCTCTCCCTTCGATTTCTTTCGCCGTTGATGACGAGCCACGCCGTTGCCGACAAACAATTCTTCAGCTTCATCGAAGGTTCCAGTTTCTGAAACTAGCTCATAAGTATCATTGTGCTGCGGAAGACGAGGTTATCTTCCTTGCACTGGATACACATGTGAAAAATGTCACTTGTACATATTCCCTTGAACATAACAGCACTGGGGCTCTATTTGATTCTATTTTTCACTTCTTGGATGAGCTGATGGTTGCTAAAGAGAATATTTCCAAGCTATTCCAAGAACTTTTGCACTGCATTGGCATCTTGCAAACCTCCATCTACCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCCTTGTTGATGCAGAAATTATCTACCAAAGAACAGGCATCACTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTGGAGGAAGTTTTGCCATGGATGGTATCCTTCCTTTCTGCAAACAAACAATCAGAAGTTACCCAGTGTTTAAATGAAATTGCGCCAATGGAAAAAGCACTGCAAGAGGTTTTGGTTTATTGGCTCAGAAGCAACAAAGAAACCTTTACTGATACCTGTTTTCAGAGTGGAGAATTTCAAAGTATTGATGGATTCCTACATATAGAAAGATCACTAGGGCTGAATTATGGTAATAGGAACTCCGAAGAAATTTCAGGTCCAATGAAAGTGAATGGCCAAGAAATAGAAGATGGAGCCAACCAGGTTAATGTCCTTCATATTTGGCATAACGCCATCAAGAAAGATTTGAAAGAAATTCTGAAAGAACTTTATCTAATAAGAAAGTCGAGCTGTTTTCAGAATTTAGACTCGATACTTATCCAACTTAAATTCTTTGCCGATGTCCTCATCTTCTACAGCAATGCTCAGAAGAAATTCTTTCATCCTGTACTGAGTAAACATGCTTATGGCTGGTTGTCCAAGTCTATTGAACAATTTCTTGGTGAAAGTAACATTGAAGATATACAGCATTTGCTATTCTATAACTTAGAAAGTGGAATACCTTTGAGCAATTTTGTAGAGAAGCTTTGCCAAAAACTTGAATTATTTGTATCAGGAGTCAACAAACAATTTGATTTTCAAGAAAATGAGGTACTTCCTATCTTTAGAAAGAACTGCAGAAATGGAATGCAAGAGAGACTTCTAAGCTTGAGCCTACATATGATGCCTCTCGGGTTACTAAAGTGTGTTATAACTTGGTTTTCAGTTCGCTTGTCTGAAAAAGAGTCCAGGTCCATTCTCTATTGCATAAAGAAAGGAAACAATACTGTCTGTAAAGCTTTTTCATCACTGTTACATGAGTGGTTCCGCATTGGTTATTCAGGTAAAACCTCTATTGAAAAATTCAGACAAGACTTGCGACATATGTTCAAAAGAAGATGCTCTTCTTTACCTGAACAAATTAAGGAAACTCATGGATTTTCTTTCCTAAATTCTGAGAAGCAGCCTCACAAAGTCCCTGGCGAGAGTTGTTTGTCCTATTCCTCCTCTTCTGGATCCACTAATGTAAACAAGTATGAGACACCATACTCCACAGGAATTAATCTGCATATATTTTTTCCGGCCACAGTTGAGAAGTTACATCAGCATCCTGCATTACATGCAGCAGAACGTTCTCCTATTTCCTTTCTTGATGATCCGAAACCAATTGACCTAATCTTTTTCTTTCACAAAGCTATCAAGAAAGATCTGGAGTACCTAGTTCTTGGCTCAGCTCAGTTAGAAAAAAATGATAAGTTGCTGATGGATTTCCAAAAACGATTCCATCTCATATACTTTCTTCATCAAATCCATAGTGATGCAGAGGATGAGGTAGTTTTTCCAGCCTTGGAGGCAAGGGGAAAACTTAAAAACATTAGCCATGCATATACCTTTGATCACAAACATGAAGTTGCGCACTTCAATAAAATATCTCGAATCCTTGATAAGATGTCTGGATTACATCTTTCAGTTTCTACAATTGATTCAAATCCTGTTGAGCCACTGGAGATTATATCCAAATATTTATCTGAAGAAATTCTAAATGAGTTGCAAGAAGAATCATCTGCCAACAAAAGCATACATTTTTTGCAGAAGGATCATATTGGTGATAATGTTGAGCTGTCTAACTGCAACTTTGATGATAAAGTTAAGGTTCATAGTGCAGAGCAAAATAATAATCAATGCCCCAAACGTACATATCAATTTCACGATCATAACAAACATGCTTGCAATGAAGTAACAGATAGCATAAATCCAGTAAAGAATGAAGGTAAATCTTCTCAACTTTGTGACAAGTCTGGGCGTTATGACCGACTTTTGAAATTGAGTCAAGATGATTTGGAGATGGTGATAAGAAGGATCTCCTCTACTGAAGTCAATATAAAAAATGATGAACTGGAAATTCCTGGGAAGCATCCATCTTACAGGGACCCTCTCAAACTAATCTACGGTTGTAAACACTACAAAAGGAACTGTAAGCTTTTAGCTCCATGTTGCAACCAACTTCATACCTGCATACATTGCCATGACGAGGAATCAGATCATTCAATTGACAGGAAATCTATTGCAAAAATGATGTGTATGAAGTGCTTGATGATTCAACCAGTCAGTGCTAGATGCTCAACAATTTCTTGTAATTTACCGATGGCAAAGTATTACTGCAGGATCTGCAAATTATTTGATGATGAAAGGGAAATTTACCATTGTCCTTACTGTAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTAGAATACTTTCACTGTATGGATTGCAATGCTTGTATGTCTCGTTCTCTCATGATACATACATGCAGGGAGAAACATTTAGAGGACAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCAGTAAAAGCCCTCCCATGTGGTCATGTGATGCACTCAACATGTTTTCAGGAATATACCCGCTTTAATTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAGCATTTCTGATGAGATTTCTTATCAAACTCAGGTTATATTATGTAATGACTGTGGAAAGAAAGGAGAGACCCCCTTCCACTGGCTCTACCACAAATGCCCTAGCTGTGGTTCCTACAACACTAGAGTTGTATGA 3198 0.3818 MPLSNANLSLPSISFAVDDEPRRCRQTILQLHRRFQFLKLAHKYHCAAEDEVIFLALDTHVKNVTCTYSLEHNSTGALFDSIFHFLDELMVAKENISKLFQELLHCIGILQTSIYQHMLKEEEQVFPLLMQKLSTKEQASLVWQFICSVPIMLLEEVLPWMVSFLSANKQSEVTQCLNEIAPMEKALQEVLVYWLRSNKETFTDTCFQSGEFQSIDGFLHIERSLGLNYGNRNSEEISGPMKVNGQEIEDGANQVNVLHIWHNAIKKDLKEILKELYLIRKSSCFQNLDSILIQLKFFADVLIFYSNAQKKFFHPVLSKHAYGWLSKSIEQFLGESNIEDIQHLLFYNLESGIPLSNFVEKLCQKLELFVSGVNKQFDFQENEVLPIFRKNCRNGMQERLLSLSLHMMPLGLLKCVITWFSVRLSEKESRSILYCIKKGNNTVCKAFSSLLHEWFRIGYSGKTSIEKFRQDLRHMFKRRCSSLPEQIKETHGFSFLNSEKQPHKVPGESCLSYSSSSGSTNVNKYETPYSTGINLHIFFPATVEKLHQHPALHAAERSPISFLDDPKPIDLIFFFHKAIKKDLEYLVLGSAQLEKNDKLLMDFQKRFHLIYFLHQIHSDAEDEVVFPALEARGKLKNISHAYTFDHKHEVAHFNKISRILDKMSGLHLSVSTIDSNPVEPLEIISKYLSEEILNELQEESSANKSIHFLQKDHIGDNVELSNCNFDDKVKVHSAEQNNNQCPKRTYQFHDHNKHACNEVTDSINPVKNEGKSSQLCDKSGRYDRLLKLSQDDLEMVIRRISSTEVNIKNDELEIPGKHPSYRDPLKLIYGCKHYKRNCKLLAPCCNQLHTCIHCHDEESDHSIDRKSIAKMMCMKCLMIQPVSARCSTISCNLPMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVEYFHCMDCNACMSRSLMIHTCREKHLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTRFNYTCPICSKSLGDMQVYFRMLDALLAEESISDEISYQTQVILCNDCGKKGETPFHWLYHKCPSCGSYNTRVV 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1528 1065 ProSiteProfiles Zinc finger CHY-type profile. 824 893 IPR008913 GO:0008270
Aed6g1528 1065 Gene3D nmb1532 protein domain like 16 147 - -
Aed6g1528 1065 Gene3D nmb1532 protein domain like 250 402 - -
Aed6g1528 1065 ProSiteProfiles Zinc finger RING-type profile. 959 1001 IPR001841 -
Aed6g1528 1065 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 19 680 - -
Aed6g1528 1065 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 718 1065 - -
Aed6g1528 1065 Pfam Ring finger domain 957 1000 IPR001841 -
Aed6g1528 1065 SUPERFAMILY RING/U-box 958 1009 - -
Aed6g1528 1065 SUPERFAMILY CHY zinc finger-like 822 887 IPR037274 GO:0008270
Aed6g1528 1065 Pfam Zinc-ribbon 1006 1063 IPR039512 -
Aed6g1528 1065 CDD RING-H2_Pirh2 958 1001 - -
Aed6g1528 1065 Gene3D nmb1532 protein domain like 563 675 - -
Aed6g1528 1065 Gene3D - 1030 1065 - -
Aed6g1528 1065 ProSiteProfiles Zinc finger CTCHY-type profile. 895 958 IPR017921 -
Aed6g1528 1065 SUPERFAMILY Zinc hairpin stack 896 950 IPR037275 -
Aed6g1528 1065 CDD Hr-like 570 660 - -
Aed6g1528 1065 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 952 1003 IPR013083 -
Aed6g1528 1065 SMART ring_2 959 1000 IPR001841 -
Aed6g1528 1065 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 19 680 - -
Aed6g1528 1065 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 718 1065 - -
Aed6g1528 1065 CDD Hr-like 13 127 - -
Aed6g1528 1065 Pfam CHY zinc finger 831 905 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1528 Aed-Chr6 19495621 19503898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1528 31 667 C2H2 Transcription Factor Family AT3G18290 31.977 2.56e-85 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1528 K16276 - gmx:100802706 1184.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1528 6 19495621 19503898 Aed6g1528 6 19495621 19503898 ECH