Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1520 ATGGAACTTCCTCTCATCAACGATTCCACATTCTCTTCCGCTAACCCTTCCTTGTCCGAGATTTGGCCCGACCACACTCCCAGGAACACTACCAAGAGACTCCTCCTCGAACAGACTCATTCTACTGCCACCAACAAACATATCAAATTATCAGCACCGGGATCTGAACTTGACGCCACTTCGCTTGCCGCCGCCGGTAACGGCTCACCTGACCAAACCGCCATACCTACTTCTTCCGACCAGCCACCTAAGCAAGACTACATACACGTGCGAGCCAGAAGAGGCCAAGCCACCGATAACCACAGTCTCGCTGAAAGAGCTAGAAGGGAAAAGATCAGTGAGAGGATGAAACTTCTTCAAGATTTAGTCCCCGGCTGCAACAAGGTAATTGGTAAAGCACTTGTGCTGGATGAGATAATTAATTATGTCCAGTCACTGCAGCGTCAGGTCGAGGTTGGGACTCAGCCATTTGATCTTGCCGGAATAATATTTGGATCACAACCGGTCAGGGGGTATGCTCAAGGATCACAACCTGGATGGATGCATATGCAGATAGCAGGTGGTTTTGAGAAAGCAACATAA 582 0.4914 MELPLINDSTFSSANPSLSEIWPDHTPRNTTKRLLLEQTHSTATNKHIKLSAPGSELDATSLAAAGNGSPDQTAIPTSSDQPPKQDYIHVRARRGQATDNHSLAERARREKISERMKLLQDLVPGCNKVIGKALVLDEIINYVQSLQRQVEVGTQPFDLAGIIFGSQPVRGYAQGSQPGWMHMQIAGGFEKAT 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1520 193 MobiDBLite consensus disorder prediction 1 25 - -
Aed6g1520 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 146 IPR011598 GO:0046983
Aed6g1520 193 PANTHER BNAC05G07950D PROTEIN 152 193 - -
Aed6g1520 193 MobiDBLite consensus disorder prediction 65 84 - -
Aed6g1520 193 MobiDBLite consensus disorder prediction 60 84 - -
Aed6g1520 193 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 152 193 IPR024097 GO:0006355
Aed6g1520 193 Gene3D - 93 155 IPR036638 GO:0046983
Aed6g1520 193 MobiDBLite consensus disorder prediction 1 26 - -
Aed6g1520 193 Pfam Helix-loop-helix DNA-binding domain 100 147 IPR011598 GO:0046983
Aed6g1520 193 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 41 151 IPR024097 GO:0006355
Aed6g1520 193 SMART finulus 102 152 IPR011598 GO:0046983
Aed6g1520 193 PANTHER BNAC05G07950D PROTEIN 41 151 - -
Aed6g1520 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 156 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1520 Aed-Chr6 19417485 19419883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1520 81 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 55.396 5.93e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed6g1520 HLH 2.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1520 - - gmx:100799646 283.493