Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1512 ATGGAACTTCCTCTCATCAACGATTCCACATTCTCTTCCGCTAACCCTTCCTTGTCCGAGATTTGGCCCGACCACACTCCCAGGAACACTACCAAGAGACTCCTCCTCGAACAGACTCATTCTACTGCCACCAACAAACATATCAAATTATCAGCACCGGGATCTGAACTTGACGCCACTTCGCTTGCCGCCGCCGGTAACGGCTCACCTGACCAAACCGCCATACCTACTTCTTCCGACCAGCCACCTAAGCAAGACTACATACACGTGCGAGCCAGAAGAGGCCAAGCCACCGATAACCACAGTCTCGCTGAAAGAGCTAGAAGGGAAAAGATCAGTGAGAGGATGAAACTTCTTCAAGATTTAGTCCCCGGCTGCAACAAGGTAATTGGTAAAGCACTTGTGCTGGATGAGATAATTAATTATGTCCAGTCACTGCAGCGTCAGGTCGAGTTCCTTTCAATGAAGCTGGAGGCAGTTAATTCGAGATTGAGCTTGAGCCCTACTATTGAATGTTTTCCTTCAAAAGAAGTTGGGACTCAGCCATTTGATCTTGCCGGAATAATATTTGGATCACAACCGGTCAGGGGGTATGCTCAAGGATCACAACCTGGATGGATGCATATGCAGATAGCAGGTGGTTTTGAGAAAGCAACATAA 660 0.4788 MELPLINDSTFSSANPSLSEIWPDHTPRNTTKRLLLEQTHSTATNKHIKLSAPGSELDATSLAAAGNGSPDQTAIPTSSDQPPKQDYIHVRARRGQATDNHSLAERARREKISERMKLLQDLVPGCNKVIGKALVLDEIINYVQSLQRQVEFLSMKLEAVNSRLSLSPTIECFPSKEVGTQPFDLAGIIFGSQPVRGYAQGSQPGWMHMQIAGGFEKAT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1512 219 MobiDBLite consensus disorder prediction 1 25 - -
Aed6g1512 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 146 IPR011598 GO:0046983
Aed6g1512 219 MobiDBLite consensus disorder prediction 65 84 - -
Aed6g1512 219 MobiDBLite consensus disorder prediction 60 84 - -
Aed6g1512 219 CDD bHLH_AtBPE_like 86 169 - -
Aed6g1512 219 Coils Coil 143 163 - -
Aed6g1512 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 164 IPR036638 GO:0046983
Aed6g1512 219 MobiDBLite consensus disorder prediction 1 26 - -
Aed6g1512 219 PANTHER BNAC05G07950D PROTEIN 41 219 - -
Aed6g1512 219 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 41 219 IPR024097 GO:0006355
Aed6g1512 219 SMART finulus 102 152 IPR011598 GO:0046983
Aed6g1512 219 Gene3D - 93 168 IPR036638 GO:0046983
Aed6g1512 219 Pfam Helix-loop-helix DNA-binding domain 100 147 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1512 Aed-Chr6 19351731 19354171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1512 81 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 67.626 1.82e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed6g1512 HLH 3.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1512 - - gmx:100799646 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0999 10 8759954 8764283 Aed6g1512 6 19351731 19354171 ECH
Aed6g1512 6 19351731 19354171 Aed6g1512 6 19351731 19354171 ECH