Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1498 ATGGCTTCTTCAGATCCTATATCTTCCAGGCACTACGCTTACAACCGCAAACAAAAATCACTTGGCCTTCTATGCACCAATTTCCTGAGCTTGTATAATCGAGAAACTGTCCACTTGATTGGCCTTGACGATGCCGCCACCCGATTAGGTGTTGAGAGAAGGCGGATCTACGACATTGTTAACGTTCTCGAGAGTATTGGGGTGCTCTCAAGGAAGGCGAAAAATCAATATACGTGGAAGGGATTTGCCGCTATTCCTCTCACTCTTCAGGAGCTCAAGGAGGATGGTTTTAAAGAGGGTTCCAATTCCCTGCGTGGTTCTGTAAACGACAACGACAAGGTGTCCGACGATGAAGATGATGATGAAACACAGTCCAATCCCGCTACTGGGAGTCAGAGTGACAAGCTAAACCCTAATTCTACTCTTCCCAAACCTCTGAAAAATGCGAAAGTTAGACGCCTATATGACATTGCAAATGTGCTATCCTCTATGAACCTTATTGAGAAGACCCATACGACAGATACAAGAAAACCAGCATTCAGGTGGCTAGGTCCCGAAGGGAAGACATGGAATGAGTCGTTTCACAAATCAAATATCAACGAGTCTAGGAAAAGGGCGTTTGGAAGTGATATCACAAACATCAGTTTTGAGAGGAATAAAGTGGAATTGTTCACGAATGGGGACTCAAATCCGAATCCTAAGAAGCCAAGGATGGAAAATGATAGTGGGCTGGGTCAGGCAGATGAAAACAGTTTAAAAGAAAGCACGAAACAAACTTCAAAGAGCTATCAGTTTGGTCCTTTCGCTCCAGCTTGCGTGCCCAAAGTTGGAGCCTCTGAGAATAACAATGTGAAGCAGGTGCATGACTGGGACAGTCTTGCAACTGCACATGGCCCCCAGTATCAAAATGAAGCTTTGAGAGAACTCTTCTCCCATTACATGGAAGCTTGGAAATCATGGTACTCTGAAATTGCTGGGAAGAGGCCATTGCAAATTTTGTAA 1002 0.4461 MASSDPISSRHYAYNRKQKSLGLLCTNFLSLYNRETVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPLTLQELKEDGFKEGSNSLRGSVNDNDKVSDDEDDDETQSNPATGSQSDKLNPNSTLPKPLKNAKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGPEGKTWNESFHKSNINESRKRAFGSDITNISFERNKVELFTNGDSNPNPKKPRMENDSGLGQADENSLKESTKQTSKSYQFGPFAPACVPKVGASENNNVKQVHDWDSLATAHGPQYQNEALRELFSHYMEAWKSWYSEIAGKRPLQIL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1498 333 MobiDBLite consensus disorder prediction 125 144 - -
Aed6g1498 333 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 8 126 - -
Aed6g1498 333 MobiDBLite consensus disorder prediction 222 260 - -
Aed6g1498 333 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Aed6g1498 333 Pfam E2F/DP family winged-helix DNA-binding domain 147 184 IPR003316 GO:0005667|GO:0006355
Aed6g1498 333 PANTHER TRANSCRIPTION FACTOR E2F 8 126 IPR015633 GO:0000978|GO:0006357
Aed6g1498 333 MobiDBLite consensus disorder prediction 99 147 - -
Aed6g1498 333 SUPERFAMILY "Winged helix" DNA-binding domain 147 185 IPR036390 -
Aed6g1498 333 MobiDBLite consensus disorder prediction 244 260 - -
Aed6g1498 333 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 149 324 - -
Aed6g1498 333 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Aed6g1498 333 SMART E2F_TDP_2 92 184 IPR003316 GO:0005667|GO:0006355
Aed6g1498 333 Gene3D - 12 83 IPR036388 -
Aed6g1498 333 Gene3D - 112 185 IPR036388 -
Aed6g1498 333 PANTHER TRANSCRIPTION FACTOR E2F 149 324 IPR015633 GO:0000978|GO:0006357
Aed6g1498 333 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1498 Aed-Chr6 19234538 19239409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1498 11 330 E2F-DP Transcription Factor Family AT3G48160 46.524 8.21e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aed6g1498 E2F_TDP 3.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1498 K09391 - gmx:100795252 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1498 6 19234538 19239409 Aed6g1498 6 19234538 19239409 ECH
Aed6g1498 6 19234538 19239409 Aed10g0984 10 8647998 8656105 PCT