Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1490 ATGGCATCATTTGCAGGCACCACCCAGAAGTGCACAGCATGTGAAAAGAAAGTGTATTGGGTGGAACAGCTCACTGCTGACAACAAGGTGTACCACAAATCTTGCTTCAGATGTCACCACTGCAAGGGTACCCTCAAGCTGAGTAATTATAGTTCCTTTGAGGGTGTCCTATACTGTAAGCCTCATTTTGATCAACTGTTTAAGATGACCGGAAGCTTGGACAAAAGTTTTGAAGGTATTCCTAGAAGTGCTAGAGTTGAAAGATCTGCTGATCAGGTCCAAACCAACAACAGGGTTTCAAGATTATTCTCTGGAACACAGGAAAAGTGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTGGGTGTGGATGGTAAATGTTACCACAAGTGTTGTTTCAGGTGCAGCCATGGAGGATGTGTAATAAGCCCATCAAATTATGTTGCACATGAACATCGTCTTTATTGTAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGTAACTTCAGTCAATTAGATAAGCATGATAATATTAGTGTTCAAGTCATCACTCAGAACAACACTACACAGCACACTGATACTGATGAGAACACAACAATAGCAACAACACAACAACCGGATCCGACTAATGGCAAAGCTGATACAACTCTAGCTGTTGAGGACTCTACTCTAGTTAATTAA 690 0.4174 MASFAGTTQKCTACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYSSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPRSARVERSADQVQTNNRVSRLFSGTQEKCVGCKKTVYPIEKVGVDGKCYHKCCFRCSHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKHDNISVQVITQNNTTQHTDTDENTTIATTQQPDPTNGKADTTLAVEDSTLVN 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1490 229 MobiDBLite consensus disorder prediction 190 229 - -
Aed6g1490 229 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 224 - -
Aed6g1490 229 SMART lim_4 10 62 IPR001781 -
Aed6g1490 229 SMART lim_4 109 161 IPR001781 -
Aed6g1490 229 Pfam LIM domain 11 65 IPR001781 -
Aed6g1490 229 Pfam LIM domain 110 165 IPR001781 -
Aed6g1490 229 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Aed6g1490 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Aed6g1490 229 PANTHER OS06G0237300 PROTEIN 1 224 IPR045268 GO:0051015
Aed6g1490 229 Gene3D Cysteine Rich Protein 104 218 - -
Aed6g1490 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Aed6g1490 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Aed6g1490 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Aed6g1490 229 CDD LIM1_SF3 7 68 - -
Aed6g1490 229 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Aed6g1490 229 CDD LIM2_SF3 110 170 - -
Aed6g1490 229 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Aed6g1490 229 Gene3D Cysteine Rich Protein 5 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1490 Aed-Chr6 19171799 19173856 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aed6g1490 LIM 3.3e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1490 K09377 - gmx:100792627 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1490 6 19171799 19173856 Aed6g1490 6 19171799 19173856 ECH
Aed6g1490 6 19171799 19173856 Aed10g0972 10 8465778 8469464 PCT