Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1480 ATGCGCAGCATTAATCAAGTTGAGGCGAAGCAAAAAGATGATGAATTGATGAAGTACTACTCATCATATTATTATCCTGAATCTCCTTTCTCAGCTCCTAACGATGATAGTAATAAAGAAGCATCATCATCATCATCTCTGAGCAGCAGAATAAGTCCAGTGATATTACTAGTGATAATAGTTCTAGCAGTGATCTTCTTCGTGTATGGACTCATCCATTTGGTTCTCTGGTTTTTCATCAAGAGACCGTCATCATCATCATCCCCTAGCTCCTCTCTATTCTACAACTACAACTCCAACAGGTTCCGCGTGTCCTCATCCACGCGCTCACGCGCTCTGATCCAGAGGCAGCTTCAGCAGCTCTTCCGCTTGCACGATTCGGGTCTCGACCAAGCCCTCATTGACTCTCTACCCGTTTTCTGTTACCAAGACTTGTTGGGGTCAAAGGAACCGTTCGATTGCGCCGTATGTTTGTGCGAGTTCTCCGAGGACGACAGCCTGAGGTTGCTTCCCATGTGCACGCACGCCTTCCACATGAACTGTCTTGACACGTGGCTTCTGTCGAATTCCACGTGTCCTCTCTGCAGGGCCTCTCTCTCTGAATATATGGAGAATCACAATCACAATCACAATCCGATGTTTAATGTTGTTGCCAATTCCAACTCTTTGGGGGAGGAAGAGAATAACGGGCGTTGTGAGAGTCAAAGGGTGTTTTCTGTGAGGCTTGGAAAATTCAGAAACAGTGGATTGGAGGGTGGAGAGGTTCAAGGGGATGGTGGTTGTAGTTTGAATGAGAGGAGATGCTACTCTATGGGTTCATATAGGTATGTCGTTCGTGATTTGAATTTGCAAGTGGTGTTGTCTCAATCTCATGATGATGATGTTTTGGAAAATGAGGGGAAGAGGATAGGGGACTCAACCAAAGGTGAGAGCTTTTCTGTTTCCAAGATATGGCTTTGGTCCAAGAAGACCAGATTTCATGCTTCTTCTAATGCACCTTTCCCTTGA 1008 0.4554 MRSINQVEAKQKDDELMKYYSSYYYPESPFSAPNDDSNKEASSSSSLSSRISPVILLVIIVLAVIFFVYGLIHLVLWFFIKRPSSSSSPSSSLFYNYNSNRFRVSSSTRSRALIQRQLQQLFRLHDSGLDQALIDSLPVFCYQDLLGSKEPFDCAVCLCEFSEDDSLRLLPMCTHAFHMNCLDTWLLSNSTCPLCRASLSEYMENHNHNHNPMFNVVANSNSLGEEENNGRCESQRVFSVRLGKFRNSGLEGGEVQGDGGCSLNERRCYSMGSYRYVVRDLNLQVVLSQSHDDDVLENEGKRIGDSTKGESFSVSKIWLWSKKTRFHASSNAPFP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1480 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 20 335 - -
Aed6g1480 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 206 IPR013083 -
Aed6g1480 335 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Aed6g1480 335 SUPERFAMILY RING/U-box 133 210 - -
Aed6g1480 335 Pfam Ring finger domain 153 196 IPR001841 -
Aed6g1480 335 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 20 335 - -
Aed6g1480 335 SMART ring_2 154 195 IPR001841 -
Aed6g1480 335 CDD RING-H2_PA-TM-RING 153 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1480 Aed-Chr6 19112498 19113505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1480 39 330 C3H Transcription Factor Family AT2G18650 38.527 4.79e-51 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1480 - - gmx:100807741 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1480 6 19112498 19113505 Aed6g1480 6 19112498 19113505 ECH