Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1470 ATGACTCAAAGGGATCGTCGCACCCTGTCATTCCCGGCGGTTCACCCCTGCGAAGGCATATCTCCGCCCACACTCGTCGCCTCTCTAATCACTCTCTCCCAATCCATATGCGATTACAATCCTCAATCATTCCCCACCCAACGCAAAAACGCAAGAGAAACAATACGCCAATTAACCATTATCTTAATATTCCTTCAAGAGATTCGAGACCGCCAGTTACTAATCCCCAACTCCACCCTCCTTTCCCTAGCTGAACTCCACTTCACCTTACAGAATATACACTTCTTGATGCAGGATTGCACTCTCCATGGTGCTCAAATCCTAATGCTCGCCAAATCACAACACGTGGCTTCCCAGTTCCGCGCCCTCATCCGCACCGTGGCCACGTCCCTCGATGTTTTGCCTCTTCAGGAGTTCCACGTCTGTGCCGAAGTCATGGAGCTGACGGAGTTAGTAACCAAGCAAGCCAGGAAGGCCAAGTTCGAGGTGGACCCCAGCGACGCACGTGCGAGCAAAACTCTCCACACGGTTCTGCGCCAGTTCGCCAGGGGAACTGAACCGGACCTCACTTCCGTACAGGGAATCATCGACTACCTCGAAATTAGAACGTGGACGGATTGTAACAGGGAGATTAAGTTCCTGGAAGAAGAAATAAGCTTAGAGTGCCGTGATCGTGAGGAGAAAGAGGTTCCCTTACTCAGTAGCTTGGTAGGGTTCTTGTGTTACTGTAGAGGTGTCCTTTTCGAAACTATAGAAGAAACCAATAATTCCGAATCCGAGGGAAGATGCAGCACGGAGATGACGGCGTTAAACTTAACATTGCTAACGTCCATTAATCCGGAGGATTTCCGTTGCCCGATTTCGCTGGAGTTGATGACGGATCCGGTAACGGTGTCAACGGGTCAAACCTACGACCGAGCCTCCATTCAGAAATGGCTCAAAGCCGGAAACACCACATGTCCCAAAACAGGGGAGAAGCTAAAAAAAACAGAGTTAGTTCCCAACGCAACGCTGAAGAGGCTCATCCAACAGTTCTGCGCCGACAACGGCATTTCGGTAAACGCCAACTCCTCATGCAACCGTAAAACCAACACCGTCGCTGCAGTTAGTCCCGCGGCGGCGCACGCGATTCAGTTTCTCGCGTGGTTTCTCACGCGCAGGCTCGCCTTCGGAAATGAAGAGCAGAAGCACAGGGCCGCGCACGAGATTCGCGTGCTTGCGAGAACCAGCATTTTCAATAGGGCGTGTTTGATTGAAATGGGAACAGTGCCTCCTCTGCTCGAACTTCTAGCCTCCTCTGCAACTGCATCATCCACGCAAGAGACTACAATCTCTGCTCTATTGAAGCTCTCTAAACACCCGAATGGACCAAACAGTATCATAAACGGCGGGGGCCTAACCGTTATTCTCTCAGTGCTGAAAAATGGACTTAGCCTCGAAGCTCGTCAAGTCGCAGCTGCTACAATATTTTATCTTTCTTCGGTGAAAGAGTACCGTAAGTTAATAGGGGAAAACCCTGAGGTGATTCCAGCTTTGGTGGAGTTAGTTAAAGAAGGAACAACCTGCGGGAGAAAGAACGCTGTGGTTGCTATCTTCGGATTACTTTTGCTACCTAGGAATCACCAAAGAGTGCTCGCAGCTGATGCTGTTCCTGCGCTGCTCGACATTCTGGCATCGTCTTCAGATAAGGACGAACTCGTGGCGGAATCTTTGGCGGTTCTTGCTGCGCTGGCTGAGAATGCTGACGGGGCGCGTGAGATATTGCAAGGCTCATCGCTGCCGTTGATTTTGGGAACGCTGCGATCTGCCACGTCACGGGCGGGGAAAGAGCACTGTGCTTCGATATTGTTGTCGCTATGCGTCAATGTTGGCGCTGAAGTAGTGGCGGTTCTCGCTAAGGACCCTTCGGTGATGCCTTTGCTCTATTCGGTTCTCACGGATGGGTCTTCTTCTCATGCTGCGAAGAAAGCGCGGTTCCTCATCAAAGTTATACAAGATTTCCACGAGACTAGAAGTGCTGGACTCAAAGCTTCCTCTTTTCCGCAGGAACGCTGGCTTCACGTTTGGTGA 2070 0.5097 MTQRDRRTLSFPAVHPCEGISPPTLVASLITLSQSICDYNPQSFPTQRKNARETIRQLTIILIFLQEIRDRQLLIPNSTLLSLAELHFTLQNIHFLMQDCTLHGAQILMLAKSQHVASQFRALIRTVATSLDVLPLQEFHVCAEVMELTELVTKQARKAKFEVDPSDARASKTLHTVLRQFARGTEPDLTSVQGIIDYLEIRTWTDCNREIKFLEEEISLECRDREEKEVPLLSSLVGFLCYCRGVLFETIEETNNSESEGRCSTEMTALNLTLLTSINPEDFRCPISLELMTDPVTVSTGQTYDRASIQKWLKAGNTTCPKTGEKLKKTELVPNATLKRLIQQFCADNGISVNANSSCNRKTNTVAAVSPAAAHAIQFLAWFLTRRLAFGNEEQKHRAAHEIRVLARTSIFNRACLIEMGTVPPLLELLASSATASSTQETTISALLKLSKHPNGPNSIINGGGLTVILSVLKNGLSLEARQVAAATIFYLSSVKEYRKLIGENPEVIPALVELVKEGTTCGRKNAVVAIFGLLLLPRNHQRVLAADAVPALLDILASSSDKDELVAESLAVLAALAENADGAREILQGSSLPLILGTLRSATSRAGKEHCASILLSLCVNVGAEVVAVLAKDPSVMPLLYSVLTDGSSSHAAKKARFLIKVIQDFHETRSAGLKASSFPQERWLHVW 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1470 689 SMART arm_5 453 494 IPR000225 GO:0005515
Aed6g1470 689 SMART arm_5 537 579 IPR000225 GO:0005515
Aed6g1470 689 SMART arm_5 409 452 IPR000225 GO:0005515
Aed6g1470 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Aed6g1470 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 465 IPR000225 GO:0005515
Aed6g1470 689 SUPERFAMILY ARM repeat 384 664 IPR016024 -
Aed6g1470 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 592 IPR000225 GO:0005515
Aed6g1470 689 Gene3D - 354 673 IPR011989 -
Aed6g1470 689 CDD RING-Ubox_PUB 283 325 IPR045210 -
Aed6g1470 689 SUPERFAMILY RING/U-box 280 352 - -
Aed6g1470 689 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Aed6g1470 689 PANTHER OS07G0532750 PROTEIN 3 674 - -
Aed6g1470 689 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Aed6g1470 689 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Aed6g1470 689 PANTHER U BOX DOMAIN-CONTAINING 3 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1470 Aed-Chr6 19063851 19065920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1470 2 689 U-box Gene Family AT1G60190 40.571 2.39e-170 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1470 - - gmx:100787869 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1470 6 19063851 19065920 Aed6g1470 6 19063851 19065920 ECH