LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g1468	ATGAAGGAAAGCAGTGATGGGTTTGTTAGAGCGGATCAGATTGATCTGAAGAGCATAGATGAACAGTTGGAGAGGCACCTCAGCAAGGTGTTGACTATAGAGAAGAAAAAGCGCTCTGAAGAGGAAGACGATAATATTGCTTCTGATCATCATCATCATCTTCATGTTAACCATCACACCACAAGCAGCGCCACTGCTTCTCCCAAATTCTCACAGCATGCTAGGTCTGCGAACTTCAAGAAGAAAAAACAGGACTGGGAGATTGATCCTTCTAAACTCATCATCAAAACTGTTATAGCTCGTGGCACTTTCGGCACTGTCCATCGTGGTGTCTATGATACCCAAGATGTTGCTGTGAAATTGTTGGACTGGGGAGAAGAAGGACAAAGGACTGAAGCAGAAATTTCCTCCCTGAGGGCAGCGTTTACACAGGAAGTTGCTGTTTGGCATAAACTTGATCACCCCAATGTCACAAAGTTTATAGGGGCAACAATGGGGTCTTCAGAATTGCAGATACAAACTGATACTGGTCTAATTGGCATGCCAAGCAATGTCTGTTGTGTTGTTGTTGAGTATCTTGCTGGAGGCAATCTGAAACAATACCTAATAAAGAACAGGAGGAGGAAGTTAGCTTTTAAAGTTGTCATCCAGATTGCACTTGACCTTGCAAGAGGGCTGAGTTATCTTCACTCTCAGAAGATTGTCCATAGAGATGTAAAGACAGAGAACATGCTGTTGGATAAGACACGCACAGTTAAAATTGCTGATTTTGGGGTTGCACGTGTCGAGGCATCAAATCCTAATGATATGACTGGGGAGACTGGCACTCTTGGTTATATGGCTCCAGAGGTTTTAAATGGCAACCCCTACAACAGGAAATGTGATGTGTACAGTTTTGGCATCTGTTTATGGGAAATATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAAATTACTTCAGCTGTTGTTCGCCAGAATTTAAGACCAGAAATGCCAAGATGTTGCCCAAGTTCTCTGGCAAATGTAATGAAGAAGTGCTGGGATGCGACTCCGGATAAGCGGCCAGAGATGGATGAGGTAGTTTCCATGCTGGAGGCCATTGACACATCCAAAGGTGGAGGTATGATCCCTCATGATCAGCAGCAGGGTTGTTTTTGCTTCCGCAAGCATAGAGGGCCTTGA	1191	0.4408	MKESSDGFVRADQIDLKSIDEQLERHLSKVLTIEKKKRSEEEDDNIASDHHHHLHVNHHTTSSATASPKFSQHARSANFKKKKQDWEIDPSKLIIKTVIARGTFGTVHRGVYDTQDVAVKLLDWGEEGQRTEAEISSLRAAFTQEVAVWHKLDHPNVTKFIGATMGSSELQIQTDTGLIGMPSNVCCVVVEYLAGGNLKQYLIKNRRRKLAFKVVIQIALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEMPRCCPSSLANVMKKCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPHDQQQGCFCFRKHRGP	396

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aed6g1468	396	Gene3D	Phosphorylase Kinase; domain 1	81	176	-	-
Aed6g1468	396	Pfam	Protein tyrosine and serine/threonine kinase	95	367	IPR001245	GO:0004672\|GO:0006468
Aed6g1468	396	PRINTS	Tyrosine kinase catalytic domain signature	190	203	IPR001245	GO:0004672\|GO:0006468
Aed6g1468	396	PRINTS	Tyrosine kinase catalytic domain signature	294	316	IPR001245	GO:0004672\|GO:0006468
Aed6g1468	396	PRINTS	Tyrosine kinase catalytic domain signature	338	360	IPR001245	GO:0004672\|GO:0006468
Aed6g1468	396	PRINTS	Tyrosine kinase catalytic domain signature	228	246	IPR001245	GO:0004672\|GO:0006468
Aed6g1468	396	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	1	390	-	-
Aed6g1468	396	ProSiteProfiles	Protein kinase domain profile.	93	370	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Aed6g1468	396	SUPERFAMILY	Protein kinase-like (PK-like)	72	367	IPR011009	-
Aed6g1468	396	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	234	246	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g1468	Aed-Chr6	19054675	19059835	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g1468	1	328	MAP Kinase Kinase Kinase	AT5G50000	77.439	0.0	535

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Aed6g1468		PK_Tyr_Ser-Thr	2.4e-64	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g1468	-		-	gmx:100807921	742.651

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed10g0957	10	8293495	8298133	Aed6g1468	6	19054675	19059835	ECH
	Aed6g1468	6	19054675	19059835	Aed6g1468	6	19054675	19059835	ECH

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