Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1467 ATGAAAAACTCAAACACTACTACTAGTGGCTTACCAAAACTCGATCGCAAAACTATTGAAAGGAACCGCAGGATTCACATGAAATCTCTCTGCTTCAAGCTTGTTTCCACTATTCCTTCCAATTACCTCAAACCCACCAAGGACATGCTTTCCCAGCAGGATCAGCTTGATCTAGCAGCGACGTATATAAAGCATCTAAGAGAAAGAATAGAGAAATTGAAGGGGGTTAAGGAGAAAGCAGTGAACATGATGATGAGATCATCAAACCAAAGCAACAATAGGATTTTCAATAATATTGGGTCTCAGTTGCCTCAACTGGAGATAAAGGACTTGGGTTCGGGAATTGAAGTGATGTTGATAAGTGGGTTGAATAAGAACTTCATGCTCTATGAAGTAATTAGTGTCCTTGAAGAAGAGGGTGCTGAAGTTGTCACTGCCAACTTCTCTACCGTTGCTGATAAGATCTTTTACACGGTTCATGCTCAGGTTAAAATATCAAGAGTTGGTGTTGAGCCAACGAGGGTGTATCAAAGGCTTCAGGAGTTGATTACACCACTTAAAAGCTGGGAGTACATATCATGA 582 0.4072 MKNSNTTTSGLPKLDRKTIERNRRIHMKSLCFKLVSTIPSNYLKPTKDMLSQQDQLDLAATYIKHLRERIEKLKGVKEKAVNMMMRSSNQSNNRIFNNIGSQLPQLEIKDLGSGIEVMLISGLNKNFMLYEVISVLEEEGAEVVTANFSTVADKIFYTVHAQVKISRVGVEPTRVYQRLQELITPLKSWEYIS 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1467 193 Coils Coil 63 83 - -
Aed6g1467 193 PANTHER TRANSCRIPTION FACTOR BHLH162 7 184 - -
Aed6g1467 193 Pfam Helix-loop-helix DNA-binding domain 16 67 IPR011598 GO:0046983
Aed6g1467 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 66 IPR011598 GO:0046983
Aed6g1467 193 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 184 IPR015660 GO:0003700|GO:0006357
Aed6g1467 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 79 IPR036638 GO:0046983
Aed6g1467 193 Gene3D - 4 95 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1467 Aed-Chr6 19045488 19046363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1467 1 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.679 1.56e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed6g1467 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1467 - - gmx:100811485 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1467 6 19045488 19046363 Aed10g0956 10 8268022 8269711 PCT