Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1465 ATGTTTGTTGATAACGGCCTTGCTGCAGGAATGGGTTTAGATTTAGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTTTGGGCTTGGACTGTAATTGGTACCCTGTGGTTCAGCAGTGCCAAGAACTGTTTGCCTGAACAGGTTCACAAATGGGGCTTTCTCATCTGGTTACTTTTTAGCCTCTGTGGACTCCTTTGCATTGCTTGCATGTGTCTGATGATGTGGTGGATACGAAGACAAGCACATTTATTGCGTGCCCAACAGGGTATCCCTGTATCTGAATATGGGGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACCAGGAGCATGGGCCAAGATGCTGCTGCTTATCATCCAGGACTTTACCTAACTCCAGCGCAGAGAGAAGCAGTTGAAGCTTTAATTCAAGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGCCCCATATGCTTAGAAGAATTCTATGTAGGGAATGAGGTCCGTGGTCTGCCTTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGTCGTTGCTCAGTATTCCCAAACCTTGATCTTAGTGCACTGTCCAATCTCCGTGCTGAGCCTGAACGATCTTCTGCCAGTGTTGTGACAACAACCAGATATGTGAGAGGCCAACCATCTAGTCAAAGTTACCGGTTAAGATTGCAAGGTCTTCTGTGTCCAGTCCGTGCTGAAATTGCAGTTCCAGTTGGGGACATAGATAATGCGTTGGAAAATGCTGAGAACGGCGTTGTATCAATTGTGACTCAAAATGCATCATCTGGAGACCATGATGTCTCTTCTTTCGAATGCATGTGTCACTGTTAG 957 0.4577 MFVDNGLAAGMGLDLGWQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEQVHKWGFLIWLLFSLCGLLCIACMCLMMWWIRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRSMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRAEPERSSASVVTTTRYVRGQPSSQSYRLRLQGLLCPVRAEIAVPVGDIDNALENAENGVVSIVTQNASSGDHDVSSFECMCHC 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1465 318 SUPERFAMILY RING/U-box 160 227 - -
Aed6g1465 318 Pfam Ring finger domain 177 219 IPR001841 -
Aed6g1465 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 224 IPR013083 -
Aed6g1465 318 SMART ring_2 178 218 IPR001841 -
Aed6g1465 318 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Aed6g1465 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 304 IPR044793 GO:0004842|GO:0010182
Aed6g1465 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1465 Aed-Chr6 19028154 19032993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1465 1 303 C3H Transcription Factor Family AT3G47990 71.569 1.43e-153 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1465 K16284 - gmx:100812016 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1465 6 19028154 19032993 Aed6g1465 6 19028154 19032993 ECH
Aed6g1465 6 19028154 19032993 Aed10g0953 10 8240217 8244992 PCT