Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1450 ATGCATTCTCAATCTCTCTCTCCTATTAAGGAACACGAACGTAGATGGTTTGAAACGCAGATGTTGCCCTCATCAGTTTCTGTTACTCCTTATCTCATGGACATTGGAACAAACCTCAGTGCTGAAAACTATGCCTCACAGGCACAGCCAATGCAGCAGCATCTGCAAGAAAACTACTTGAAACCCTGCAGCATGCAGCAGGAAGATCAGCTTCCTTTTGGAACTCCTTCCTCGCAGGGTTTCTTGCAAGATTTTCATCATATTGATGATGATCATCAGTTTCATGTGAATGTGAATGGATCGTCATCAATATCCAATCCCATTTTCGGGGTTCAGACTCCAAATTTTGATCCTTTTGATCACAATAACAATGTAACATGTGAGTCTACACCTCCTCCTGATTTTGAATTTTTTAAGTGCAAGCCTTTTGCTCATGAGAGTAATATTGGTATTAGTGGTGGACATGCTCATCATCTTATGGACAATTTCCAATATGTAGGTTATAGTAATTTGAACCTCCCTCGGACGAATCAGCTGGATATGATGGTTGCAAACCAAAGTTATATGCCCTTTAATGCTCTTGAAACCAACAAGCCTTTGAATTTTCTTGTACCAGATGAAGTCTCATGCATTTCCCCACCAAATTATTATAAGAGAGTTGGTTTGAGTAAAAACCACAGGGAATCTCCAAGCACTAGGAGAACATTCAAGGCTCGGAAGAAGTCCAACATAGTGAAGGGACAATGGACATCAGATGAAGACAGATTGTTGATTCAACTGGTGGAACAATATGGAGTGAGGAAGTGGTCACATATAGCTCAGGCATTGCCTGGAAGAATAGGGAAACAATGCAGAGAACGATGGCATAACCATTTAAGGCCAGACATTAAGAAGGACATATGGACTGAAGAAGAGGATAAGATACTGATCGAAGCTCATGCAGAGATAGGAAACAAGTGGGCTGAGATTGCAAAAAAATTGCCTGGAAGAACTGAAAACTCAATCAAAAACCATTGGAACGCAACAAAGAGAAGACAATATTCCAAAAGAAAGTGTCGTTCGAAGTATCCTAGAGGCTCTCTTCTTCAGGAATATATCAAGAGCTTGAACTTGGATAAGAATCCACCAATAGACTATCGAAAAAAATCTGCCAAAAATAATGCTAATGCCAAGACAAACAACAATGGCAAAGCAGCAGCTCAGCCACAGTGTAATTCAGATCAGTTTTGTCCCAATGAGCACTTGGTACCAAGGTATGATTTTAACGAGGTCCCAGATTTTTGTTTGGATGATAACTTGTTTGAAGAGGGGTGCAGCATTGATTCTCTGCTAGATGATATGCAAAGTGCTTCTACTATGGATGATAAAGATCAGTTTGATGGAAAAATGCATTGTGCTCCTACTAATACTATGGAGGGAAAACAATCTCATCAGTGTTGCATGCAGATGCAGTGTGTTCATGTTGTTGATGTGGATGAGCATCATGATCATGAGACTGAGATGATGATGATAGCACCAACATTTGGGAATGAAGTTAAGAAGGAACTGGACTTGGTGGAGATGATGTCACACATCAATGAAAGCCATTATAGTACGCCACACTCACCACGTTGTTGA 1617 0.4045 MHSQSLSPIKEHERRWFETQMLPSSVSVTPYLMDIGTNLSAENYASQAQPMQQHLQENYLKPCSMQQEDQLPFGTPSSQGFLQDFHHIDDDHQFHVNVNGSSSISNPIFGVQTPNFDPFDHNNNVTCESTPPPDFEFFKCKPFAHESNIGISGGHAHHLMDNFQYVGYSNLNLPRTNQLDMMVANQSYMPFNALETNKPLNFLVPDEVSCISPPNYYKRVGLSKNHRESPSTRRTFKARKKSNIVKGQWTSDEDRLLIQLVEQYGVRKWSHIAQALPGRIGKQCRERWHNHLRPDIKKDIWTEEEDKILIEAHAEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDKNPPIDYRKKSAKNNANAKTNNNGKAAAQPQCNSDQFCPNEHLVPRYDFNEVPDFCLDDNLFEEGCSIDSLLDDMQSASTMDDKDQFDGKMHCAPTNTMEGKQSHQCCMQMQCVHVVDVDEHHDHETEMMMIAPTFGNEVKKELDLVEMMSHINESHYSTPHSPRC 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1450 538 SUPERFAMILY Homeodomain-like 243 339 IPR009057 -
Aed6g1450 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 297 347 IPR017930 -
Aed6g1450 538 Gene3D - 300 363 - -
Aed6g1450 538 MobiDBLite consensus disorder prediction 376 403 - -
Aed6g1450 538 ProSiteProfiles Myb-like domain profile. 293 343 IPR001005 -
Aed6g1450 538 CDD SANT 301 343 IPR001005 -
Aed6g1450 538 PANTHER MYB PROTEIN-RELATED 155 437 - -
Aed6g1450 538 PANTHER BNAC03G62830D PROTEIN 155 437 - -
Aed6g1450 538 ProSiteProfiles Myb-like domain profile. 241 292 IPR001005 -
Aed6g1450 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 296 IPR017930 -
Aed6g1450 538 SMART sant 297 345 IPR001005 -
Aed6g1450 538 SMART sant 245 294 IPR001005 -
Aed6g1450 538 MobiDBLite consensus disorder prediction 386 403 - -
Aed6g1450 538 Gene3D - 245 298 - -
Aed6g1450 538 Pfam Myb-like DNA-binding domain 301 340 IPR001005 -
Aed6g1450 538 Pfam Myb-like DNA-binding domain 246 292 IPR001005 -
Aed6g1450 538 CDD SANT 249 292 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1450 Aed-Chr6 18827712 18829806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1450 65 447 MYB Transcription Factor Family AT4G18770 48.649 1.26e-99 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed6g1450 Myb_DNA-binding 8.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1450 K09422 - gmx:100816653 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0935 10 7923631 7925646 Aed6g1450 6 18827712 18829806 ECH
Aed6g1450 6 18827712 18829806 Aed6g1450 6 18827712 18829806 ECH
Aed6g1450 6 18827712 18829806 Aed10g0935 10 7923631 7925646 PCT