Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1443 ATGCCGCAGTTTTTCAGTCTTATTACCTGGCTAGTCCTGATGTCGTCGTTGTTATTAATCCCACGTGCGGATTCCTCCTTCGACGCGCGGATACACGAAACCGGTCTCACGTGCGGGGCTTCTGAGAGCCCTGGATCGAGCGAATCCAAGTTCATGGCCATAATGGCGGTGTCGTTTCACGTCATAGAGCGCGGCTGGGGAGCGCAGGCACTCCTCGGTTCTGGGCCTCCGATGTACGCATTGGGCCAATGCCGGCGCGACCTCAGGTCCACGGAGTGCTATTCGTGTTTCATCCAAGCGAGGCAGGTCCTGTCGCGGTGCATGCCCAAGTCAGCCGGCAGAATCTACCTCGACGGCTGCTTCCTCCGCTACGACAACTACTCGTTCTTCCGCGAGACCGTGGACCCTACTCGCGACATCAACGTCTGCGGCTCGCAGCAGGGTCTGGTAAACGACGGGGAAAAACAGGTGGCGGCGGCGGTGGCGAACGCGACGAATAGCGCAACGGAACACGGGTTCGCGGTGGCCGGAGAGGATGAGGTTTTCGTGCTGGCGCAGTGCTGGGCGACGCTTGATAAGTGGAGGTGCGAGAGATGCTTGAGTGCAGCAGCGAGAAAAGTGCAGGAATGTGTGCCTAACACTGAGGGTAGAAGTCTCTTCACTGGTTGCTTTTTGAGGTATTCAACTCACAAGTTCTACAACGACGTCGTTGCACTGCGTGACATCAAGATTTCTAGAAATTCTACACATAGTTTCTGGATGATCGTTGCATGTATATTAATAGCGATTGTGTGGGCTCTACTCAACCTTCTCGCTGCATCTATATGCCGTAAAAGAACGCGTATACAACAAGTGAGCGACGGTTATGGTGGTTCACCTAGTTTTACCTACGTGGCTGGCTTCAGTTTTAGGTACGATGTACTTGAGATGGCAACAAACTATTTTGATCCCGCAAACAAATTAGGGCAGGGTGGAGCTGACTGGCTCCATATGAAAATCAACTGTTTATGGCGGGGATATATGGCTCCTGAGTATATTTTCAAAGGACAATTGACAGAGAAGGCAGACATCTATGCTTTTGGTGTGTTTGTTATTGAAGTTGTCTGTGGTAAGAAGAACAGCGATTACATACGAGGGTCAATTTCATTACTCCACAGTGTGTGGACGAATTACAATGCAAACAATCTCACAGCATCCGTTGATCCATCTCTACATGGAAAATTTAAGGTAGAAGAGGCATCAAATGCACTCCATGCTGCCCTTCTTTGTACACAATCTTCTGATACTTTCAGACCATCCATGTCTGAAGTACTTCAGATGCTAACAAAGAAAGAGTACGTTATTCCCTCCCCAAAGCAGCAACAATTCCTTAATTTCAGTAGGCTAAGTCAAAATAACCGAACTCTAACTTCCACAACCAGTATTCAATCTTCAAATGGGAATGCAAGTGCAAGGTCCTCCTTCCACAGCACCAGGAGTTTCATAGTTGCAAATGATGATATAACAGTACTAGAGAATTCCTCCTTTTCTCCTTCTTCCAGGTTCACCACTATTGGGGCACCTGAGCCTAGGTAG 1575 0.4908 MPQFFSLITWLVLMSSLLLIPRADSSFDARIHETGLTCGASESPGSSESKFMAIMAVSFHVIERGWGAQALLGSGPPMYALGQCRRDLRSTECYSCFIQARQVLSRCMPKSAGRIYLDGCFLRYDNYSFFRETVDPTRDINVCGSQQGLVNDGEKQVAAAVANATNSATEHGFAVAGEDEVFVLAQCWATLDKWRCERCLSAAARKVQECVPNTEGRSLFTGCFLRYSTHKFYNDVVALRDIKISRNSTHSFWMIVACILIAIVWALLNLLAASICRKRTRIQQVSDGYGGSPSFTYVAGFSFRYDVLEMATNYFDPANKLGQGGADWLHMKINCLWRGYMAPEYIFKGQLTEKADIYAFGVFVIEVVCGKKNSDYIRGSISLLHSVWTNYNANNLTASVDPSLHGKFKVEEASNALHAALLCTQSSDTFRPSMSEVLQMLTKKEYVIPSPKQQQFLNFSRLSQNNRTLTSTTSIQSSNGNASARSSFHSTRSFIVANDDITVLENSSFSPSSRFTTIGAPEPR 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1443 524 ProSiteProfiles Gnk2-homologous domain profile. 29 129 IPR002902 -
Aed6g1443 524 SUPERFAMILY Protein kinase-like (PK-like) 329 470 IPR011009 -
Aed6g1443 524 Pfam Salt stress response/antifungal 73 127 IPR002902 -
Aed6g1443 524 Pfam Salt stress response/antifungal 158 229 IPR002902 -
Aed6g1443 524 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 337 522 - -
Aed6g1443 524 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 3 325 - -
Aed6g1443 524 Pfam Protein tyrosine and serine/threonine kinase 340 440 IPR001245 GO:0004672|GO:0006468
Aed6g1443 524 ProSiteProfiles Gnk2-homologous domain profile. 131 232 IPR002902 -
Aed6g1443 524 Gene3D - 148 232 IPR038408 -
Aed6g1443 524 Gene3D - 45 129 IPR038408 -
Aed6g1443 524 Gene3D Transferase(Phosphotransferase) domain 1 315 459 - -
Aed6g1443 524 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 337 522 - -
Aed6g1443 524 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 3 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1443 Aed-Chr6 18784643 18787243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1443 10 333 Receptor kinase-like Gene Family AT5G40380 34.226 3.04e-51 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aed6g1443 PK_Tyr_Ser-Thr 6.2e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1443 - - gmx:100780384 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1605 7 19183813 19188216 Aed6g1443 6 18784643 18787243 ECH
Aed6g1443 6 18784643 18787243 Aed6g1443 6 18784643 18787243 ECH