Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1422 ATGGCATCATCGAGCTCTTACAACTCACCATGTGCTGCTTGCAAGTTCTTGAGGAGGAAATGCATGCCAGGGTGCATCTTTGCACCTTACTTCCCGCCGGAAGAGCCTCAAAAGTTCGCAAACGTGCACAAAATATTCGGTGCGAGCAACGTGACGAAGCTCCTGAACGAGCTCCTCCCTCACCAGAGAGAGGATGCAGTGAACTCACTGGCTTATGAGGCAGAGGCACGCGTGAGGGACCCAGTTTATGGGTGTGTAGGAGCCATCTCTTTCCTGCAGAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACGCTGATCTGCTACGCTATTCTTACACTGACATCACTCCAGCATCTCTTTCTGTGCCACCAGGACTTACTACTTCGTTTCACCACCAAGTGCATCATCCCCAAAGGGCGCAGTTTAGTGCAAGATTTGTTGGTAACGAAGCTGCAACTGGGTTTTATCGCCAATCTACTGCCACTGCTTTTTCCTTTCCTTATGCTCTTCCTTGGACTGATACCTCTTCTGAGGATATCAGTGAGGGAGCAGCAGGAGGAGGAGGTGGCTCTAAGCCCTAA 591 0.5042 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDITPASLSVPPGLTTSFHHQVHHPQRAQFSARFVGNEAATGFYRQSTATAFSFPYALPWTDTSSEDISEGAAGGGGGSKP 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1422 196 Coils Coil 89 109 - -
Aed6g1422 196 PANTHER ELONGATED PETIOLULE 1 1 190 - -
Aed6g1422 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 190 - -
Aed6g1422 196 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Aed6g1422 196 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1422 Aed-Chr6 18654645 18655845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1422 2 116 AS2 family AT5G63090 91.304 1.45e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed6g1422 LOB 3.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1422 - - gmx:100775922 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1422 6 18654645 18655845 Aed6g1422 6 18654645 18655845 ECH