Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1419 ATGGGTCGCCATTCCTGTTGTGTTAAGCAAAAACTCAGGAAAGGCTTATGGTCCCCTGAAGAAGATGAGAAGCTATTCAATTACATTACTAGATTTGGTGTTGGATGCTGGAGTTCGGTTCCCAAACTAGCTGGACTGCAAAGATGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATCTGAGGCCTGATTTGAAGAGAGGCATGTTCTCACAGCAAGAGGAGGATCTTATAATCAGTCTTCATGAAGTTCTTGGAAACAGGTGGGCTCAAATAGCAGCACAGTTACCAGGGAGAACAGATAATGAGATTAAAAACTTCTGGAATTCATGTTTAAAGAAGAAGCTTCTGAAGCAAGGGATTGATCCAAACACACACAAGCCTCTAACAGAAGCTCATGTGAAGGAAGAAAAGAAAATCACAGAGACATCATCATCACCTATGCAAACATCATTGTCTCAAGGCTCTTCAATTCCAATAACCTTTCCTTCATCACAGGGAACATCATCACTACTAATAAGTGATTCCAATTACTATGATGGAGGGCTAACAGAAGCTTCAAGAGAAATTTTCATGGCCAAGCCAGCATTGGACCCTTTGTCCTACTATGATTTTCCAATGGGTGTTGCGCAGTCTGGTTTTAACTTACCTATGAGTCAGTATCAGACAACAAGCCTTAAAGCATCTGAACATCAGAACCCCTTTGGACTCAATTCAAGCTATGTGTTCTCTTCAATGCCAAGCCTAACCAATTCTGATCACGTGTCGGTGAATGAGTTTTCAGACAACAATTCAGCTTCGAAAATGGGTTCATTGTTCATGAATGATCAAGTGAAAGAAAGTTCCAGCAACAATAGCTCGAACATGAGCACCATTTACCCTGGAGGAGGGTGTCATATCAGCAGCAGCATGATGGAAAATGCAGGGTTCTCGTGGGAGGGTGACAACAACAAGTTTGACCCTTTGTTTCAGTTCCAAGTAAATGCCACAAAATCAGAGGATTTTAAGACAAGTTCATGGGAAGAAGGGCATCTGCATACTCAAAATTCCATAGATTTCACTAGCTTTCCGTTAACGTCACTTTCAGAAGATCTAACAAGTGCAAGTTTTGATGTATTCCAGCATATATGA 1131 0.412 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPNTHKPLTEAHVKEEKKITETSSSPMQTSLSQGSSIPITFPSSQGTSSLLISDSNYYDGGLTEASREIFMAKPALDPLSYYDFPMGVAQSGFNLPMSQYQTTSLKASEHQNPFGLNSSYVFSSMPSLTNSDHVSVNEFSDNNSASKMGSLFMNDQVKESSSNNSSNMSTIYPGGGCHISSSMMENAGFSWEGDNNKFDPLFQFQVNATKSEDFKTSSWEEGHLHTQNSIDFTSFPLTSLSEDLTSASFDVFQHI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1419 376 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed6g1419 376 PANTHER MYB TRANSCRIPTION FACTOR 1 371 - -
Aed6g1419 376 CDD SANT 70 109 IPR001005 -
Aed6g1419 376 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Aed6g1419 376 Gene3D - 11 67 - -
Aed6g1419 376 CDD SANT 17 61 IPR001005 -
Aed6g1419 376 SMART sant 66 114 IPR001005 -
Aed6g1419 376 SMART sant 13 63 IPR001005 -
Aed6g1419 376 Gene3D - 68 144 - -
Aed6g1419 376 MobiDBLite consensus disorder prediction 143 159 - -
Aed6g1419 376 PANTHER MYB DOMAIN PROTEIN 55 1 371 - -
Aed6g1419 376 MobiDBLite consensus disorder prediction 138 159 - -
Aed6g1419 376 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aed6g1419 376 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed6g1419 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed6g1419 376 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed6g1419 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1419 Aed-Chr6 18613473 18614902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1419 1 170 MYB Transcription Factor Family AT1G57560 70.000 3.06e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed6g1419 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1419 K09422 - gmx:100811140 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1419 6 18613473 18614902 Aed6g1419 6 18613473 18614902 ECH
Aed6g1419 6 18613473 18614902 Aed10g0896 10 7504007 7505476 PCT