Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1415 ATGAACCCCTACGATAATAGATATTCCGACGCCGCTTCCTTTCGCGGCCGTCGCAGTGATTTCGCTGGATCTATTCCGCCGCCTTCTTTCGTCGGCCGCAGCGGCGCGGTTCCCTATGGCGCTCCTTACGTCGGATCCGCAGCAGTTGCTCAGGTTCCAGCCTTTGTGCCCCCTTCAGGAGGCTTTAACGTAGGTCGAGGTGGTGGTAGAGCGGGGAATGGTTACGTGAGTGATAGAAGATATGACATGGGTCGTGGCGGTGGTGGAAGAGGTCGTGGTGGTGGTGGTGGTGGAAGAGCCGGAGCTCACGGTTTTAGGGGCTCCGGGAGAGGAGGTAGGCACGGTGGTGGCTCTTCTAGGGACGATTTGAACAACATTTCACTCCCGAAGCAGGATTTTAAGAATTTAGTCCCTTTTGAGAAGAATTTCTACGTCGAGTGCCCTGCTGTGAGGGCCATGTCTGAGCCAGAAGTTGCGCATTACCGTGCCAGTAGAGAGATCACTGTGCAAGGGAACGATGTGCCAAAGCCAATTCGGATGTTTCACGAGGCGAATTTTCCTGATTACTGCCTCGAGGTCATTGCCAATCTGGGTTTTGCTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGTCATATTTGCTTCCTGCTTTAGTGCACGTCAATGCACAACCTCGATTGGCACATGGGGACGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCTCGAGCTAATATTAGAAGTACGTGCATCTATGGTGGTGCTCCAAAGGGTCCCCAAATTCGTGAGCTTAAAAGAGGCGTTGAGACTGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTGCATAGAGTGACTTACCTAGTCTTGGACGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTTGGCCAGATTCGACCAGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAACCCTTACAAGGTAGTTATTGGGTCACCATACCTGAAAGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTAACAGACATGGAGAAATACAATAGATTAATCAGACTGCTGAAAGAAGTGGTGGATGGGAGCCGAGTTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAGTTACAAGACAAATGAGAATGGATGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGTCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATTAAATGTGTGATCAATTATGATTTTCCATCAAGCCTTGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATACACCTTTTTTACACATGCTAATGCCAAGTTTGCTAGGGATCTGATTAAGATTTTACAAGATGCTGGTCAAGTTGTGAGTCCTGCATTGTCTGCATTGGTTCGCTCAGCTGGTTCTAGTCAATTTGGATCAGGGGGAGGTTTTCGTTCAAGAGGACGAGGAAGCTATGGAAATCGAGGTTTAACGTCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGAGGCCCTGGCAGTTTCTTTAG 1812 0.4763 MNPYDNRYSDAASFRGRRSDFAGSIPPPSFVGRSGAVPYGAPYVGSAAVAQVPAFVPPSGGFNVGRGGGRAGNGYVSDRRYDMGRGGGGRGRGGGGGGRAGAHGFRGSGRGGRHGGGSSRDDLNNISLPKQDFKNLVPFEKNFYVECPAVRAMSEPEVAHYRASREITVQGNDVPKPIRMFHEANFPDYCLEVIANLGFAEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAVQIQEEALKFGSRANIRSTCIYGGAPKGPQIRELKRGVETVIATPGRLIDMLEAQHTNLHRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLLWSATWPREVETLARQFLRNPYKVVIGSPYLKANQSINQVVEVVTDMEKYNRLIRLLKEVVDGSRVLIFMETKKGCDQVTRQMRMDGWPALSIHGDKNQSERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQVVSPALSALVRSAGSSQFGSGGGFRSRGRGSYGNRGLTSGSNAIPLGSKRPWQFL 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1415 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 385 IPR014001 -
Aed6g1415 603 SMART helicmild6 438 519 IPR001650 -
Aed6g1415 603 Gene3D - 152 389 IPR027417 -
Aed6g1415 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 558 IPR001650 -
Aed6g1415 603 MobiDBLite consensus disorder prediction 562 584 - -
Aed6g1415 603 CDD DEADc_DDX5_DDX17 191 386 - -
Aed6g1415 603 CDD SF2_C_DEAD 398 528 - -
Aed6g1415 603 Pfam Helicase conserved C-terminal domain 409 519 IPR001650 -
Aed6g1415 603 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 331 339 IPR000629 -
Aed6g1415 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 539 IPR027417 -
Aed6g1415 603 Pfam DEAD/DEAH box helicase 203 374 IPR011545 GO:0003676|GO:0005524
Aed6g1415 603 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 59 590 - -
Aed6g1415 603 PANTHER LD32873P 59 590 - -
Aed6g1415 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 179 207 IPR014014 GO:0003724
Aed6g1415 603 MobiDBLite consensus disorder prediction 75 126 - -
Aed6g1415 603 SMART ultradead3 198 401 IPR014001 -
Aed6g1415 603 Gene3D - 390 561 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1415 Aed-Chr6 18585024 18589790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1415 166 539 Eukaryotic Initiation Factors Gene Family AT3G19760 35.467 4.32e-70 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1415 K12823 - gmx:100817092 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1415 6 18585024 18589790 Aed6g1415 6 18585024 18589790 ECH