Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1413 ATGATGTCTCTATTTTCCGGCACGGTGTTCCCGATTCTCCTCCTCCACCTCTCAGTTTTCGTGATACCCGCACTTTCCCTTGACTTTATATTCAACTCCTTCACCGGCGTCAGCAACCTCACTCTCGTCAAAGACGCTCGCATCGACGCCTCCGTGATTCGCATGAACAACGACTCCAACCAGTACTCTTATGGCCGCGCCTTCTACCCCATCAAAATCCCCATGAAAGCTAACTCTTCCATTTCTTCGTTCTCTACTTCCTTTGTTTTCTCTATTTTGCCGGAAATCTCTACAAGCCCCGGCTTCGGCCTCGCCTTCGTCCTCTGCAACACTACCGACCCTCCCGGCGCCCTCGCCAGCCAGTACTTCGGCCTATTCACTAACGCAACCTCCCCCTCCGTTTTCCCCCTCGTCGCCGTCGAATTCGACACCGGCCGGAACCCCGAGTTCAACGACATAGACGACAACCACATCGGAATCGACCTCAACAACATCGAATCCATCAACGCCACCACCGCCGGCTACTACAACTCCTCCGGCGGCTTCGTATCGGTTCGCATGCGCACCGGCCAAAACATCCACGCCTGGATCGATTTCGACGGCGAGAGTCTCCAATTCAACGTAACGGTGGCGCCAATCGGCGTCTCGCGCCCTACGAAGCCCACGCTCTCGTATCAGAATCCCGCCATAGCCGACTACTTGTCCGCAGACATGTTCGTCGGGTTTTCCGCTTCGAAAACGAACTGGATCGAGGCGCAGAGAGTCCTCGCATGGAGCTTCAACGATTCAGGGCCAGCGAGGGAGCTCAACACGACGAACTTGCCAGTGTTTCAACTTGAATCGTCTTCTTCCTCTCTCTCCGGCGGCGCAATAGCGGGAATTGTCATAGGCTGTTTTGTTTTCGTGCTTATAGTTGCTTCTGGAATTTACTTATGGTGGCGAATCCAGAACGGGAAAGAGGAAGAAGACGAGATCGAAGATTGGGAGCTGGAGTACTGGCCGCACAGATTTTCCTACGAGGAGTTAAGTTCCGCGACAGGGGAGTTTCGGAAGGAGATGCTGTTAGGTTCGGGAGGGTTCGGGAGAGTGTACAAAGGAACGTTACCGAACAGCACCGAAATTGCAGTGAAGTGCGTGAATCACGATTCGAAGCAAGGGTTAAGGGAATTCATGGCGGAGATTTCAAGCATGGGGAGGCTTCAGCACAAGAATTTGGTTCAAATGAGAGGATGGTGCAGAAAAGGGAACGAGCTTTTGTTGGTTTATGATTACATGCCAAACGGGAGTCTCAACAAGTGGGTTTTCGATAGACCAGAGAAGCTTCTGGGATGGGAGCAACGGCGTCGTATCCTTGTCGACGTGGCAGAGGGGCTTAACTACCTTCACCACGGTTGGGACCAGGTTGTTATCCATAGGGATATCAAATCCAGTAACATTCTGTTGGACGCAGATATGAGGGGGAGATTAGGGGACTTTGGTTTGGCCAAGCTTTACACGCACGGGGAGGTTCCCAACACCACACGTGTGGTCGGGACGTTGGGGTACTTGGCGCCGGAGCTTGCCACGGTTGCGGCGCCGACTTCGGCGAGTGACATGTACAGCTTCGGGGTGGTGCTTTTGGAGGTGGCGTGCGGGAGGCGGCCGATTGAGACGTCGGTGGCGGAGGACGAGGTGGTGCTCATTGATTGGGTTAGGGATCTCTACGCGAAGGGGTGCGCGCGTGAGGCTGCGGATGCGAGGATTAGAGGGGAGTGCGATGAGGGAGACGTGGAGATGGTGTTGAAGCTTGGGTTGGCTTGTTGCCACCCTGATCCTCAGAGGAGACCCACCATGAAGGAGGTTGTTGCGCTTCTCCTCGGAGAAGAGCCGCCGGAGGCTCCCGGAAAAGTCTTGTCTGATTTGGTTCGCGGCGGCGAAGATTCTGTTTGA 1929 0.5459 MMSLFSGTVFPILLLHLSVFVIPALSLDFIFNSFTGVSNLTLVKDARIDASVIRMNNDSNQYSYGRAFYPIKIPMKANSSISSFSTSFVFSILPEISTSPGFGLAFVLCNTTDPPGALASQYFGLFTNATSPSVFPLVAVEFDTGRNPEFNDIDDNHIGIDLNNIESINATTAGYYNSSGGFVSVRMRTGQNIHAWIDFDGESLQFNVTVAPIGVSRPTKPTLSYQNPAIADYLSADMFVGFSASKTNWIEAQRVLAWSFNDSGPARELNTTNLPVFQLESSSSSLSGGAIAGIVIGCFVFVLIVASGIYLWWRIQNGKEEEDEIEDWELEYWPHRFSYEELSSATGEFRKEMLLGSGGFGRVYKGTLPNSTEIAVKCVNHDSKQGLREFMAEISSMGRLQHKNLVQMRGWCRKGNELLLVYDYMPNGSLNKWVFDRPEKLLGWEQRRRILVDVAEGLNYLHHGWDQVVIHRDIKSSNILLDADMRGRLGDFGLAKLYTHGEVPNTTRVVGTLGYLAPELATVAAPTSASDMYSFGVVLLEVACGRRPIETSVAEDEVVLIDWVRDLYAKGCAREAADARIRGECDEGDVEMVLKLGLACCHPDPQRRPTMKEVVALLLGEEPPEAPGKVLSDLVRGGEDSV 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1413 642 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Aed6g1413 642 Gene3D Transferase(Phosphotransferase) domain 1 425 623 - -
Aed6g1413 642 PANTHER - 10 638 - -
Aed6g1413 642 SMART serkin_6 349 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1413 642 Pfam Protein kinase domain 350 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1413 642 SUPERFAMILY Protein kinase-like (PK-like) 326 618 IPR011009 -
Aed6g1413 642 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 277 IPR013320 -
Aed6g1413 642 Gene3D Phosphorylase Kinase; domain 1 334 424 - -
Aed6g1413 642 CDD lectin_legume_LecRK_Arcelin_ConA 27 264 IPR001220 GO:0030246
Aed6g1413 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Aed6g1413 642 ProSitePatterns Legume lectins beta-chain signature. 138 144 IPR019825 -
Aed6g1413 642 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1413 642 Gene3D - 25 283 - -
Aed6g1413 642 Pfam Legume lectin domain 26 274 IPR001220 GO:0030246
Aed6g1413 642 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.1 10 638 - -
Aed6g1413 642 CDD STKc_IRAK 355 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1413 Aed-Chr6 18573945 18575873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1413 26 620 Receptor kinase-like Gene Family AT1G15530 68.264 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Aed6g1413 Pkinase 6.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1413 - - gmx:100780660 1180.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1413 6 18573945 18575873 Aed6g1413 6 18573945 18575873 ECH