Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1403 ATGGCAATTTCTTCGGCGTCAGCGGCAGCTACAGCTACAGCTACCTCAAAGCTCGCATACCCTCATCATGTCTACTCCTCTCCTTCACCATCCTCCAATTGCCTCTTCCTCAAAGCCAACACACCCTCCACCACTACCCACCTCTCTTCTTCCTTCATCCACTCCTCCAAAATCCTCCACCTCGCCCCAGCTGCCGCCGCCGCCACCCGCCGCCGCTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCATGTCAACATCGGCACCATCGGCCACGTTGACCACGGCAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGTAATAGCGCCCCCAAAAAATACGACGAGATCGACGCCGCCCCCGAGGAGCGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAATACGAGACCGAGAACCGTCACTACGCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAAAACATGATCACCGGCGCCGCCCAGATGGACGGTGCCATCCTCGTCGTCTCCGGCGCCGACGGTCCCATGCCCCAAACCAAAGAACACATTCTCTTAGCCAAACAAGTCGGCGTCCCCAACATTGTCGTCTTCCTCAACAAACAGGACCAGGTTGATGACGAGGAGCTTCTTCAGTTAGTTGAACTGGAAGTTCGCGAGCTTCTTTCCTCGTACGAGTTCCCCGGCGACGATGTTCCAATTGTCTCCGGTTCTGCATTGCTGGCTTTGGAAGCTTTGATGGCTAACCCTGCCATCAAACGCGGCGAAAACCAATGGGTTGATAAAATTTACGAGCTTATGGAAGCTGTGGATGACTACATTCCCATCCCTCAGCGCCAAACCGAGCTTCCCTTTTTGTTGGCCATTGAGGATGTTTTCACCATCACCGGCCGCGGAACCGTCGCCACCGGAAGGGTCGAGAGAGGTACCATTAGGGTTGGAGAGACAGTTGATATTGTTGGTGTTAAGGACACTAGGAACACCACTGTGACTGGGGTGGAAATGTTTCAGAAGATTCTTGATGAGGCTTTGGCTGGGGACAATGTGGGGTTGTTGCTTAGGGGTATTCAGAAGACTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGGTCCATTACCCCTCACACCAAGTTTTCTGCAATTGTCTATGTCTTGAAGAAGGAAGAGGGTGGGAGGCACTCTCCTTTCTTTGCTGGGTACCGGCCTCAGTTCTACATGAGGACTACCGATGTTACTGGTAAGGTAACTTCCATTATGAATGACGAGGATGAGGAGTCCAAGATGGTTCAGTTGACAAGATTCCCCCGTCTCCCCAGGCCCCAACATAGAATGAGGACTGATTTTGTTGTTAACAGAATAAGTACTTGA 1410 0.5468 MAISSASAAATATATSKLAYPHHVYSSPSPSSNCLFLKANTPSTTTHLSSSFIHSSKILHLAPAAAAATRRRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIVSGSALLALEALMANPAIKRGENQWVDKIYELMEAVDDYIPIPQRQTELPFLLAIEDVFTITGRGTVATGRVERGTIRVGETVDIVGVKDTRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLAKPGSITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDEDEESKMVQLTRFPRLPRPQHRMRTDFVVNRIST 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1403 469 PRINTS GTP-binding elongation factor signature 135 143 IPR000795 GO:0003924|GO:0005525
Aed6g1403 469 PRINTS GTP-binding elongation factor signature 91 104 IPR000795 GO:0003924|GO:0005525
Aed6g1403 469 PRINTS GTP-binding elongation factor signature 155 165 IPR000795 GO:0003924|GO:0005525
Aed6g1403 469 PRINTS GTP-binding elongation factor signature 171 182 IPR000795 GO:0003924|GO:0005525
Aed6g1403 469 PRINTS GTP-binding elongation factor signature 208 217 IPR000795 GO:0003924|GO:0005525
Aed6g1403 469 Gene3D - 79 290 IPR027417 -
Aed6g1403 469 PANTHER ELONGATION FACTOR TU 44 443 - -
Aed6g1403 469 TIGRFAM EF-Tu: translation elongation factor Tu 79 435 IPR004541 GO:0003746|GO:0005525|GO:0006414
Aed6g1403 469 Pfam Elongation factor Tu C-terminal domain 385 442 IPR004160 -
Aed6g1403 469 CDD EF_Tu 88 290 IPR041709 -
Aed6g1403 469 Pfam Elongation factor Tu domain 2 312 380 IPR004161 GO:0005525
Aed6g1403 469 Gene3D Translation factors 294 387 - -
Aed6g1403 469 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 385 441 IPR009001 -
Aed6g1403 469 PANTHER ELONGATION FACTOR TU-RELATED 44 443 - -
Aed6g1403 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 313 IPR027417 -
Aed6g1403 469 CDD EFTU_II 298 384 IPR033720 -
Aed6g1403 469 Pfam Elongation factor Tu GTP binding domain 87 288 IPR000795 GO:0003924|GO:0005525
Aed6g1403 469 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 87 291 IPR000795 GO:0003924|GO:0005525
Aed6g1403 469 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 128 143 IPR031157 -
Aed6g1403 469 Gene3D Translation factors 388 447 - -
Aed6g1403 469 TIGRFAM small_GTP: small GTP-binding protein domain 90 222 IPR005225 GO:0005525
Aed6g1403 469 SUPERFAMILY Translation proteins 292 388 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1403 Aed-Chr6 18536555 18539154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1403 85 440 Eukaryotic Initiation Factors Gene Family AT5G60390 30.749 6.39e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1403 K02358 - gmx:100791320 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1403 6 18536555 18539154 Aed6g1403 6 18536555 18539154 ECH
Aed6g1403 6 18536555 18539154 Aed10g0882 10 7397860 7399314 PCT