Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1392 ATGGAGATGGAACGTGTCTTCGAATTTCCTCACACTCACATGGATCGGCGCCCAAGAAAGAGGGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGGCTCAGGTAGGATTGTTTTGTGAACAAGATGTTGGGGCTATTTCAAGCTTTGCTCTATCAAGGGGTCCCTCAGAACATACCACTAGTTCTCTAGTTAAGACAGTTGCTCGAAATGGTTCTCCCCCTTGGCGAGATGATGACAAAGATGGGCATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATCCATAGCAAAATGGGTGAAGGAACTTTTGGGCAGGTCTTAGAATGCTGGGATAGAGAAAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGGGATAAAGAAGTATCGAGATGCAGCCATGATAGAAATTGAGGTGTTGCAACAGCTTGGTAAACATGATAGAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTCTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACAATTGGAATGTATAGCATTCATGCATGACTTGCGCATGATTCATACTGATCTGAAGCCTGAAAACATACTACTAGTTTCACCAGAGTATGTCAAAATTCCTGACTACAAGAGTTCATCTAGATCACCAAGTTCCTATTTCAAGAAAGTTCCCAAATCAAGTGCGATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATCAGAATTACATTGTATCAACTCGTCATTATAGGGCTCCTGAAGTTATCCTTGGACTTGGCTGGAGCTATCCATGTGATATATGGAGTGTGGGATGTATATTGGTTGAGTTATGCACGGGTGAGGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTTGCACTGATGGAAAGGGTGCTTGGTCCATTACCACAGCACATGTTGAAGAGAGTCGACCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGGTGCAGCCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGTTACAGAACCTTGTAATGCAGCATGTAGATCATTCGGCTGGCGATCTCATACATCTCTTGCAGGGGTTACTTAGATTTGACCCCTCTGAAAGACTTACAGCCAAGGAAGCTCTTAGACACTCCTTTTTTATGAGAGATCACTTTAGAAGATAA 1290 0.4302 MEMERVFEFPHTHMDRRPRKRARLGWDIPEVPKAQVGLFCEQDVGAISSFALSRGPSEHTTSSLVKTVARNGSPPWRDDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYRDAAMIEIEVLQQLGKHDRGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQQLECIAFMHDLRMIHTDLKPENILLVSPEYVKIPDYKSSSRSPSSYFKKVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLALMERVLGPLPQHMLKRVDRHAEKYVRRGRLDWPEGAASRESIKAVMKLPRLQNLVMQHVDHSAGDLIHLLQGLLRFDPSERLTAKEALRHSFFMRDHFRR 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1392 429 Gene3D Transferase(Phosphotransferase) domain 1 151 422 - -
Aed6g1392 429 SMART serkin_6 97 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1392 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Aed6g1392 429 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 429 - -
Aed6g1392 429 CDD PKc_CLK 84 422 - -
Aed6g1392 429 Gene3D Phosphorylase Kinase; domain 1 84 177 - -
Aed6g1392 429 ProSiteProfiles Protein kinase domain profile. 97 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1392 429 SUPERFAMILY Protein kinase-like (PK-like) 84 426 IPR011009 -
Aed6g1392 429 PANTHER KINASE AFC1 1 429 - -
Aed6g1392 429 Pfam Protein kinase domain 97 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1392 Aed-Chr6 18455013 18458885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1392 95 422 MAP Kinase Gene Family AT5G19010 30.523 1.07e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Aed6g1392 Pkinase 5.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1392 K08287 - gmx:100804452 844.343