LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g1387	ATGTCTATGTCTCTCACAACCGTGCCTGCATCGTTCAACAAGTCCCTCACAATGGCGGAGTCGTGCCTCCTATCTCTCCCTTCACTCTTCTACCCAAAAAACAAGTCCCTCTCTCTCTCAATTCCCTCGAAACCCATCATCAACCTGCAACTCCCATGCGCCAATTCCACGCTCTTTCCCCTCACCGCCAAGACAACGCGCCACTCTTCTCTCCTCACATTCGTGGCGCAGACTTCGGACTGGGCCAAAGAAGGAGAAGAAGAAGAGGCGGCGTGGGAGAACCAAGGCGACACCGCGTGGGGCACCGAAGAAGGTGGCGGCGATGACGTGGAGGAAGGGGGTTTTGCCGACCCTTCTGATGAAGTTAAGATCTTTGTTGGGAACTTGCCTTTCGATGTTGACAGTGAGAAATTGGCTTCGCTTTTTGAACAGGCTGGCACCGTTGAGGTTGCTGAGGTTATTTATAATAGGCTCACTGACCGGAGTCGCGGGTTTGGATTTGTCACCATGAGTACAATTGAAGAGCTTGAGAAGGCTGTCCAGAAGTTCAGTGGCTATGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCACAGCCTGAACGTACGTCACGCCCACCACCATCACGATCCTTTACTTCTGGTTTAAGAGTCTATGTTGGCAACTTGCCATGGGATGTTGACAATGCTCGGCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGGATGCTCGGGTGGTCTTTGACAGAGAGACTGGTAGATCACGTGGTTTTGGCTTTGTCACGATGTCCAGTGAGGTTGATGTGAATGATGCAATTGCTGCCCTTGATGGTCAGAGCTTGGATGGAAGGGCAATCAGAGTGAATGTTGCAGAGGAAAGGCCTAGACGCCCCTTTTGA	918	0.5065	MSMSLTTVPASFNKSLTMAESCLLSLPSLFYPKNKSLSLSIPSKPIINLQLPCANSTLFPLTAKTTRHSSLLTFVAQTSDWAKEGEEEEAAWENQGDTAWGTEEGGGDDVEEGGFADPSDEVKIFVGNLPFDVDSEKLASLFEQAGTVEVAEVIYNRLTDRSRGFGFVTMSTIEELEKAVQKFSGYELNGRVLTVNKAAPKGAQPERTSRPPPSRSFTSGLRVYVGNLPWDVDNARLEQIFSEHGKVEDARVVFDRETGRSRGFGFVTMSSEVDVNDAIAALDGQSLDGRAIRVNVAEERPRRPF	305

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g1387	305	CDD	RRM_HP0827_like	222	298	-	-
	Aed6g1387	305	MobiDBLite	consensus disorder prediction	85	114	-	-
	Aed6g1387	305	CDD	RRM_HP0827_like	123	200	-	-
	Aed6g1387	305	MobiDBLite	consensus disorder prediction	197	218	-	-
	Aed6g1387	305	SUPERFAMILY	RNA-binding domain, RBD	211	303	IPR035979	GO:0003676
	Aed6g1387	305	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	124	193	IPR000504	GO:0003723
	Aed6g1387	305	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	223	293	IPR000504	GO:0003723
	Aed6g1387	305	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	122	200	IPR000504	GO:0003723
	Aed6g1387	305	PANTHER	OS02G0815200 PROTEIN	106	304	-	-
	Aed6g1387	305	PANTHER	RIBONUCLEOPROTEIN	106	304	-	-
	Aed6g1387	305	PANTHER	RIBONUCLEOPROTEIN	10	95	-	-
	Aed6g1387	305	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	221	299	IPR000504	GO:0003723
	Aed6g1387	305	SUPERFAMILY	RNA-binding domain, RBD	118	215	IPR035979	GO:0003676
	Aed6g1387	305	SMART	rrm1_1	123	196	IPR000504	GO:0003723
	Aed6g1387	305	SMART	rrm1_1	222	295	IPR000504	GO:0003723
	Aed6g1387	305	Gene3D	-	207	304	IPR012677	-
	Aed6g1387	305	Gene3D	-	75	206	IPR012677	-
	Aed6g1387	305	PANTHER	OS02G0815200 PROTEIN	10	95	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g1387	Aed-Chr6	18428769	18431669	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g1387	111	303	Eukaryotic Initiation Factors Gene Family	AT3G16380	34.848	2.95e-23	97.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed10g0867	10	7261084	7264027	Aed6g1387	6	18428769	18431669	ECH
	Aed6g1387	6	18428769	18431669	Aed6g1387	6	18428769	18431669	ECH
	Aed6g1387	6	18428769	18431669	Aed10g0867	10	7261084	7264027	PCT