Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1379 ATGGCCACCACTTCTTCCCTCTTCTTTTTCTTCTTCTCTCTCCTCACTCCATCCCTCATTTCCTCTTCCCCTGTCCAAGACCCTCACTTTGTGGCCCAAGAAGTTAACAGGAAAATCAATGCCTCTGTAGCTAGAAGGAATCTGGGGTACTTGTCCTGCGGGACAGGGAACCCCATTGATGACTGTTGGAGGTGCGATCCAAACTGGGAGAAGAACCGCCAGAGGCTAGCAGACTGCGCAATCGGTTTCGGGAAAGGCGCCATTGGCGGAAAGAACGGGAAAATCTACGTGGTCACCGACTCCGGCGACGACAATCCGGTAACACCGAAGCCGGGAACTCTCCGGTACGCGGTGATTCAAGACGAGCCACTCTGGATCATATTCGCCAGAGACATGGTGATTAAGCTGAAGGAGGAGCTTATAATGAACTCCTTCAAAACCATCGACGGAAGAGGCGCTAGCGTGCACATCGCGGGTGGTCCATGCATAACGATTCAGTTTGTTACCAACGTTATAATCCACGGCTTGAGTATTCATGATTGCAAGCAGGGGGGGAACGCTATGGTGCGGGACTCCCCACGGCACTACGGGTGGAGGACCGTGTCGGACGGTGATGGCGTGTCTATCTTTGGTGGAAGTCATATTTGGGTTGACCATTGCTCTTTGTCTAACTGCAACGATGGGTTGATCGATGCCATTCATGGCTCTACCGCGATTACCATCTCTAACAATTACATGACTCACCATGACAAGGTTATGCTTTTGGGCCATAGTGATTCTTACACTCAGGACAAGAACATGCAGGTCACTATTGCTTTCAACCACTTTGGTGAAGGCCTTGTTCAAAGAATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTATACACACTGGGAAATGTATGCCATTGGGGGAAGTGCTAATCCAACCATCAATAGCCAAGGCAATAGGTTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCGGAGGGTGAATGGAAAGGGTGGAATTGGAGGTCAGAAGGGGACTTGTTAGTAAACGGTGCGTTTTTCACGGCATCGGGGGCTGGAGCCTCCTCTAGCTATGCAAGAGCTTCTAGCCTCAGTGCAAGGCCATCTTCACTGGTGGGGTCCATAACCACTACTGCGGGTGCACTCAACTGTAGGAAGGGTTCCCGCTGCTGA 1218 0.5074 MATTSSLFFFFFSLLTPSLISSSPVQDPHFVAQEVNRKINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKGAIGGKNGKIYVVTDSGDDNPVTPKPGTLRYAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNVIIHGLSIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPEGEWKGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTTAGALNCRKGSRC 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1379 405 Pfam Pectate lyase 138 322 IPR002022 -
Aed6g1379 405 PANTHER PECTATE LYASE 18-RELATED 5 402 IPR045032 GO:0030570
Aed6g1379 405 Gene3D - 56 398 IPR012334 -
Aed6g1379 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Aed6g1379 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Aed6g1379 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Aed6g1379 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Aed6g1379 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Aed6g1379 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Aed6g1379 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Aed6g1379 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Aed6g1379 405 PANTHER PECTATE LYASE 5 402 - -
Aed6g1379 405 SMART amb_all 131 328 IPR002022 -
Aed6g1379 405 SUPERFAMILY Pectin lyase-like 33 400 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1379 Aed-Chr6 18382204 18384155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1379 1 405 Polysaccharide Lyase AT5G63180 79.756 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1379 K01728 - gmx:100101868 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0857 10 7183578 7186228 Aed6g1379 6 18382204 18384155 ECH
Aed7g1904 7 22135608 22137811 Aed6g1379 6 18382204 18384155 ECH
Aed6g1379 6 18382204 18384155 Aed6g1379 6 18382204 18384155 ECH
Aed6g1379 6 18382204 18384155 Aed10g0857 10 7183578 7186228 PCT