Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1378 ATGTGGTTTATTAGTTTGTTGGTTTTTTTCTTCATTTCATTCTGTGGTTCCTCTTTTTTTGTGCCAACTGTGCTCTTTGATGATTTTTTATTTTATTTTTTCTCGTCTAGGTTGGTTTGCACTGTTTCATGTGGGTTCTGGTTATGCAAGAGTGAGGCAGTGATGGATGTTGGTAGGAGGCATTCTGTTGATATTCCTATTTCCAAAACTCTTGTGGCACTGAGGAGAGTGAGGTCATTGAGGGATCCATCAACTAATGGTGTTAGCAGACTCTCTCCTTTGATTGATGATGGAGATTGGGAAGATGGTTCTTCTAGTAATGGGGTTTCTCTGAGTTTGAGGTTCCTGAATGATTCTCATGCATGTGATTCTGATGGTAATGGTGTTTTAAGAACAAGTAGTTTGGATTTTAAGGGACAAAGAGATCAGGACACTACTGAGTTTGAATTGGACATGTGGAACTCTAAGATGAAACCTTGTGGTATTTCTGGAGATAAATCACCAAATGAAAGCTGTTGTAGCAACCATGAAGGTAGAGGATTGGATTTGGTTTCCACCATGCCTTCTACTAATCATTTGAAGGATGGAGAGTCATATTTGTCAACAGCAACAACAAGAGTAGAACACTCAAAGTCAGCAAGAAAATCCCTACGCAAGAATCAAGTGAAACCATCTGAAGTGATTGGTGATGTTGCAAGCCATGTAGGAAGTCAACAATGCCATTCTGTTCTAGATGCTCTTTCGGCTCGTAGTGCCTCGGAATATATCACTCAAGATGTTGATGTTTTGGATAATCACCATGGATGTGGATTAAGGAGTTGTTGGTCAAAGTCACCCAGGTTTAGAGAATCATCACATCATTATTCTCAAATAGAAGGCCTTCCGTTGATATTGCAACATGTTAATGAGACGGATTGCAATGGACATAGAAACATGAGACACATTGGTGGTGAACTTAGTCCAACTTTGGAAACTCCTAGAAGTTTGTCTATGAAATTCAGGCCAAAATCATTCAGTGATTTGGTTGGACAAAATGTGATAGGAAAGTCTCTTTTGGGTGCTATCTCTACAGGAAGGATATCATCATTTTATCTCTTCCATGGACCACGAGGCACAGGCAAGACCTCTGTGTCTAGGATATTTGCCGCTGCACTGAATTGCCTCTCCTCTCTGGAGCAAAAACCGTGTGGTCTGTGTAGAGAATGTGTTTTGTTCTTTCTGGGAAGAAGTAAAAATGTTAAGGAAGTTGATTCTTTGAGAATCAATCGCCCAGACAAGGTTAAGTCCCTTGTTAAGAATGCATGCATTCCTCCTGTTTCCTTGCGTTTTAAGGTGTTGATTGTTGATGAGTGCCAGTTATTGCATGGGGAAACATGGGCGTGTCTTTTGAATAGCCTAGAGACTGTTTCTCCACATGTGATTTTTGTAATGATCACTCCTGATTTGGATAAGCTTCCTCGGAGTGCAGTTTCCCGGGCTCAGAGGTATCACTTTGCAAAGATTAAAGATGCTGACATTGCAAGAAGATTGGAAAGGATTTGTGTTGAAGAAGGTCTTGATTCTGAACAAGTTGCTTTGGACTTCATTGCTGCTAGATCCTGTGGTTCTCTTAGGGATGCTGAAACTATGCTTGATCAACTGAGTTTGCTTGGTAAAAAAATTACTATTTCCTTAGTCCACGAGCTTACTGGGGTCATTTCTGATGATGAATTGCTTGATTTGCTGGACTTGGCTTTGTCATCTGACACTTCAAATACAGTTATAAGAGCTCGGGAACTCGTCCGAACCAGGATAGATCCTTTACAACTTATATCACAGTTGGCAAATCTTATTATGGACATTCTTGCAGGGAAATGTGAAGTTGGTGCTTCTGAAACCAGAACAAGATTTTCGGAAGCAGACCTACAGAAACTAAGTCAAGCATTAAGAATACTGTCTGAAACAGAGAAGCAGTTGAGAATTTCCAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTACAGTTGAGCTCCATAGAATACTCATCTGTGGATGCAAATGATACGAAGTTGTGTGCACAAGCCACGTCCATTAGAGATGGTGATATCTATAGTACATCTCCTAAAGGGGACAGCTTGGAGCATCTTGCTACAATGGGCCGTGCAGTTGCCGAGTTGGAGTTCCACCATCGTGACTATGTAAGTAGGGCTGAGAAGTCATGGAAGCTGATAGCAAGTTGTCTGCAGTTCATATTGGGTTGTAACCTTGAGCTCAGAATCAACTATGCACCTTCTTGTACTTCAGAATCTATGTATGCAAAACTGAAGAGGTCATCTTTCAATTTCTTCGGTTGTTCTCGTAGAATTCGTTGGAAATCTTTATCATCTAATGAACAAGGAAGCGAATCAGACTATGCTGATTACACCTCTCAAAAGCCAATGACGAAGGATCAAACTCTAGCTCATTCCTCTGATTGCGAACCTCAGGTGGTGCCACCATTTGAGTCCTACAATGGAATGCAGGTTGTAACAACTTTGAGAAGTAGTGAAGGAAACTTGCTTAGCTCAGGGAAGATGTTATTGAATAGGCCAGATCAAGAGACTCCAAGAATCTCTTGTTCTAGAGTTGATTCTCCCAAGGAAGAGGGATGCAATTATGAACATGAACACCTAGCTTCATCAACCCTTCATTTGGATAATCAGTCTGACTGTTTTCCTCGAACCCGTTGGCTTCATAAGAAGTTCTGTTCTTCATATGCACCACAACAACAGAAGGATTTTGTTTTATCTATCCCCAAGTTAAAATGTTCTGAGACTCATAGATATGATCTCGAACCTTGTGTCTTTTCCCACAGCTCTAACAACTGCACCAAAGCCATTGTGGAAAAGTAG 2871 0.4086 MWFISLLVFFFISFCGSSFFVPTVLFDDFLFYFFSSRLVCTVSCGFWLCKSEAVMDVGRRHSVDIPISKTLVALRRVRSLRDPSTNGVSRLSPLIDDGDWEDGSSSNGVSLSLRFLNDSHACDSDGNGVLRTSSLDFKGQRDQDTTEFELDMWNSKMKPCGISGDKSPNESCCSNHEGRGLDLVSTMPSTNHLKDGESYLSTATTRVEHSKSARKSLRKNQVKPSEVIGDVASHVGSQQCHSVLDALSARSASEYITQDVDVLDNHHGCGLRSCWSKSPRFRESSHHYSQIEGLPLILQHVNETDCNGHRNMRHIGGELSPTLETPRSLSMKFRPKSFSDLVGQNVIGKSLLGAISTGRISSFYLFHGPRGTGKTSVSRIFAAALNCLSSLEQKPCGLCRECVLFFLGRSKNVKEVDSLRINRPDKVKSLVKNACIPPVSLRFKVLIVDECQLLHGETWACLLNSLETVSPHVIFVMITPDLDKLPRSAVSRAQRYHFAKIKDADIARRLERICVEEGLDSEQVALDFIAARSCGSLRDAETMLDQLSLLGKKITISLVHELTGVISDDELLDLLDLALSSDTSNTVIRARELVRTRIDPLQLISQLANLIMDILAGKCEVGASETRTRFSEADLQKLSQALRILSETEKQLRISKNQTTWFTAALLQLSSIEYSSVDANDTKLCAQATSIRDGDIYSTSPKGDSLEHLATMGRAVAELEFHHRDYVSRAEKSWKLIASCLQFILGCNLELRINYAPSCTSESMYAKLKRSSFNFFGCSRRIRWKSLSSNEQGSESDYADYTSQKPMTKDQTLAHSSDCEPQVVPPFESYNGMQVVTTLRSSEGNLLSSGKMLLNRPDQETPRISCSRVDSPKEEGCNYEHEHLASSTLHLDNQSDCFPRTRWLHKKFCSSYAPQQQKDFVLSIPKLKCSETHRYDLEPCVFSHSSNNCTKAIVEK 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1378 956 Coils Coil 638 658 - -
Aed6g1378 956 Pfam DNA polymerase III, delta subunit 344 501 - -
Aed6g1378 956 Gene3D - 322 499 IPR027417 -
Aed6g1378 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 559 IPR027417 -
Aed6g1378 956 Gene3D - 502 564 - -
Aed6g1378 956 CDD HLD_clamp_pol_III_gamma_tau 501 564 IPR045085 -
Aed6g1378 956 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 711 932 - -
Aed6g1378 956 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 144 709 - -
Aed6g1378 956 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 144 709 - -
Aed6g1378 956 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 711 932 - -
Aed6g1378 956 SUPERFAMILY post-AAA+ oligomerization domain-like 566 671 IPR008921 GO:0003677|GO:0006260
Aed6g1378 956 SMART AAA_5 360 520 IPR003593 -
Aed6g1378 956 CDD AAA 342 492 - -
Aed6g1378 956 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 328 669 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1378 Aed-Chr6 18366207 18369976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1378 319 652 Core DNA Replication Machinery Family AT1G21690 24.779 4.32e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1378 - - pvu:PHAVU_003G207500g 1405.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1378 6 18366207 18369976 Aed6g1378 6 18366207 18369976 ECH
Aed6g1378 6 18366207 18369976 Aed10g0854 10 7157702 7161322 PCT