Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1376 ATGGAAGGCACTGAATCAGATTCTGCGCCACTTTCTTCCATTTCCAATGGCGAAGAAGAGCCCCAATTGGGAGCACCTTCTTCCCCCGCTGCTCCTCCTGAGCCGTCAGATCTCATTCACGCGCCGGAGGAAGAAGACCCACTCGCCGGGGAGCTTCAGAGCAAGTTGGATTTGAAGGGTGAAGATGAAACTGAGGAGAAAGTTTCGGACTTTAACGACGGTGATGAAGAAACTGCTAAGGGTGATGCTGATAGTAGGGGTTGGGAGACCAATAGTTGGTATGGGGATGTTGGTGATATGCCTGATTATGATGAATATGGTGATCTTGGTGATGGTGATTATGGAATGGAGAAGAAGGAAAATAGAAACAGTGGTGGAACTCACCACTACCCTTTGAGGCCTGAAGCTGAGGATTGTCCATTTTATATGAGAACTGGGAATTGCAAGTTTGGGTTTAATTGCAAGTTCAATCACCCCATTAGGAGGAAAAGTCAGGCTGCTGTTAAAGAGAATGCAGGAGAAAGAGAAGAAACAACAGAAAGATCGGGCACAACAGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGAAAATCTTGTAAATATAACCACACAAGAGGAAAATTTTCAACAGCACCAGCACCAGCACCAGTGTCAGAACTTAACTTTCTTGGCTTGCCGATTCGTCTGGGAGAGAGAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTCAACCATCCTGACCCTACAGCTGTTGGAGGACGTGATCCTCCTTCAGGGTTTGGTAATGGAGGGCCTATTTCATTACAAGGTGTATCACAATCATCTGTTCCCTCCTGGTCTTCTCCAAGAGCATTAAATGAAGCATCTTCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGAGTTTCTACCCAAAGTTCTGATTGGAATGGATATCAGGCATCTGTCTACTTACCCGAGAGGAGTATGCATCCTCCACCTTCTACATTTGTCCTGAACAACCCAGCAATTGATACAAATGTTTACATGCACCATCAAAAGCAGATGCCTGTTGAAGAGTTTCCAGAAAGGCTTGGTGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGATTGCAAGATTAGCTCCATGCAGTCTCAGTGACAAGGGTCTGCCTTTGAGACCTGACCAAAGTATCTGCTCACATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGATAAACTTGCAGCCAGTACTGATGCCTGGACTTGGTCAGCAACCCTACTCAAACTCAGCTAGTGTTGAGGTGGCTGGGAGAGGTGGAAGTACAGGTGTAACCGATGCGACAATTCAGCAATCTGTGTAA 1449 0.4534 MEGTESDSAPLSSISNGEEEPQLGAPSSPAAPPEPSDLIHAPEEEDPLAGELQSKLDLKGEDETEEKVSDFNDGDEETAKGDADSRGWETNSWYGDVGDMPDYDEYGDLGDGDYGMEKKENRNSGGTHHYPLRPEAEDCPFYMRTGNCKFGFNCKFNHPIRRKSQAAVKENAGEREETTERSGTTECKYYQRSGGCKFGKSCKYNHTRGKFSTAPAPAPVSELNFLGLPIRLGERECPYYMRTGSCKFGANCKFNHPDPTAVGGRDPPSGFGNGGPISLQGVSQSSVPSWSSPRALNEASSFVPMMLSPTQGVSTQSSDWNGYQASVYLPERSMHPPPSTFVLNNPAIDTNVYMHHQKQMPVEEFPERLGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLAPCSLSDKGLPLRPDQSICSHYSRYGICKFGPACKFDHPINLQPVLMPGLGQQPYSNSASVEVAGRGGSTGVTDATIQQSV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1376 482 SUPERFAMILY CCCH zinc finger 183 211 IPR036855 GO:0046872
Aed6g1376 482 Gene3D - 175 264 - -
Aed6g1376 482 Gene3D - 413 461 - -
Aed6g1376 482 Gene3D - 335 406 - -
Aed6g1376 482 SUPERFAMILY CCCH zinc finger 372 397 IPR036855 GO:0046872
Aed6g1376 482 ProSiteProfiles Zinc finger C3H1-type profile. 414 442 IPR000571 GO:0046872
Aed6g1376 482 SMART c3hfinal6 368 395 IPR000571 GO:0046872
Aed6g1376 482 SMART c3hfinal6 133 160 IPR000571 GO:0046872
Aed6g1376 482 SMART c3hfinal6 181 208 IPR000571 GO:0046872
Aed6g1376 482 SMART c3hfinal6 231 258 IPR000571 GO:0046872
Aed6g1376 482 SMART c3hfinal6 414 441 IPR000571 GO:0046872
Aed6g1376 482 Gene3D - 114 172 - -
Aed6g1376 482 ProSiteProfiles Zinc finger C3H1-type profile. 231 259 IPR000571 GO:0046872
Aed6g1376 482 ProSiteProfiles Zinc finger C3H1-type profile. 181 209 IPR000571 GO:0046872
Aed6g1376 482 MobiDBLite consensus disorder prediction 461 482 - -
Aed6g1376 482 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Aed6g1376 482 PANTHER PROTEIN PHOSPHATASE RELATED 12 72 - -
Aed6g1376 482 PANTHER PROTEIN PHOSPHATASE RELATED 94 482 - -
Aed6g1376 482 SUPERFAMILY CCCH zinc finger 412 440 IPR036855 GO:0046872
Aed6g1376 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 370 395 IPR000571 GO:0046872
Aed6g1376 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 257 IPR000571 GO:0046872
Aed6g1376 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 159 IPR000571 GO:0046872
Aed6g1376 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 416 440 IPR000571 GO:0046872
Aed6g1376 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 183 206 IPR000571 GO:0046872
Aed6g1376 482 MobiDBLite consensus disorder prediction 38 66 - -
Aed6g1376 482 ProSiteProfiles Zinc finger C3H1-type profile. 368 396 IPR000571 GO:0046872
Aed6g1376 482 SUPERFAMILY CCCH zinc finger 132 161 IPR036855 GO:0046872
Aed6g1376 482 MobiDBLite consensus disorder prediction 1 22 - -
Aed6g1376 482 SUPERFAMILY CCCH zinc finger 232 258 IPR036855 GO:0046872
Aed6g1376 482 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 12 72 - -
Aed6g1376 482 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 94 482 - -
Aed6g1376 482 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1376 Aed-Chr6 18350340 18356203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1376 127 443 C2H2 Transcription Factor Family AT3G02830 41.791 1.37e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed6g1376 zf-CCCH 5.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1376 - - gmx:100786894 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0395 7 2883934 2885496 Aed6g1376 6 18350340 18356203 ECH
Aed6g1376 6 18350340 18356203 Aed6g1376 6 18350340 18356203 ECH
Aed6g1376 6 18350340 18356203 Aed10g0845 10 7074636 7080725 PCT