Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1359 ATGGCAACAGGGCGAAAAAGTGTTTCGCTGAGAAGAGAATTTTGCAAATATGGTTCCACCAAGGTGTTTGATCACTCTAGGAATGCTTCTTTCGGTGTGGTCGAAGTGGGTGGTTCTCGCAACCATCAATTCTCTCATTCGGGTGAAAAAGAGGAAGGCGAGATCTGTGTTGAACTCGAGCGTGCCACTGTGGTGCCACCTCCAGAGAAGAAAAGGAAGTTTTCTCCAATTATATGGGACCTAGCAGAGAAGGAAGGAAGAGTCTCTTCAAAGAGTAAGATCTCGCAGACTGCTGCTCTGTCTCCTCCTCGTCCATCTCTACCAAGCAGTCCTGGAGCCAACTGTGGTGATGTTATGGAGGAGTCTTCCCTGGATTTGCGAAGTTATAAGCAAGATGTGGAGGAAGATAATGATGTGAAAGGATGGACAATCACAAAGTCAAGATGGGCTTGTGATGATGATCCCTCACCAAGGGGTGCTGATGACAAACAGAAGCATGGCAAAGTGAGCTCCAGTCCTGAAATTGGTGAATTCCGGGGCAGTGGATCCTCGGAGAGCACAATCACTACTAGATCATCAAGAAGCAGCGGAAGAGATCATTATTTAGGTCATTCTACTGATGAGGCAGATTCTGAAAAGGATTTCGTCATGGACTCCATGGTTGATGTTGAGAAACAAAGTGACCTTGGTGATTCTCCATCAGATTCTGATGAATCAGATTCTGGTGAGAGTGGTAGTATGATGCATGGGCAGAGAAACATAAACATGCTTCAGAGTTGCAGAAGTGTGTGCGAGTTTGAGATGATCAAGAAAATAAACGAAGGAACTTATGGTGTTGTTTACAAGGGTAGGGATAAGAAGACTGGAGAGCTAGTAGCATTGAAGAAGGTGAAGATGAACATAGAGAGGGATGGCTTTCCTATGTCATCATTGAGGGAAATAAACATCCTCTTGTCTTTTAATCATCCCTCCATTGTGAATGTTAAAGAAGTAGTTGTAGATGATTTTGACGGTACTTTTATGGTAATGGAGCACATGGACTATGACCTTAAGGGGCTGATGGAGGTTAAGAAGCAGCCCTTTAGCATGAGTGAAATTAAATCCTTGATGCGGCAACTTCTTGAAGGTGTCAGGTATCTCCATGATAATTGGGTTATCCATAGGGATTTGAAGTCATCAAACATTCTGCTCAACCATGATGGGGAGCTTAAAATATGTGACTTTGGGTTGTCAAGGCAGTATGGAAGCCCGCTGAAGCCATATACTCCAATTGTGGTTACACTATGGTACAGAGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACCGCAATTGACATGTGGTCGGTGGGTTGCATAATGGCCGAATTAATTGCCAAGGAGCCTCTGTTCAGGGGTAAAAGTGAACTTGAACAACTTGATAAGATTTTTCAAACTCTGGGTATGCCTGATGTGAAAATTTGGCCAGGATTATCCAAATTACCTGGGGCTAAAGCGAATTTTGTTAAGCAACCGTTTAATAAATTAAGGAAGAAGTTTCCAGCTGCATCATTTACTGGTTTGCCAGTTTTATCTGAGCTGGGATTTGACTTGTTGAAGCAGCTGCTAACTTATGACCCTGAAAAGAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCTCTTCCCAAATCTGATTTCAAGCCAATTTTTCCTTCTTGGCAGCGCTAG 1728 0.4352 MATGRKSVSLRREFCKYGSTKVFDHSRNASFGVVEVGGSRNHQFSHSGEKEEGEICVELERATVVPPPEKKRKFSPIIWDLAEKEGRVSSKSKISQTAALSPPRPSLPSSPGANCGDVMEESSLDLRSYKQDVEEDNDVKGWTITKSRWACDDDPSPRGADDKQKHGKVSSSPEIGEFRGSGSSESTITTRSSRSSGRDHYLGHSTDEADSEKDFVMDSMVDVEKQSDLGDSPSDSDESDSGESGSMMHGQRNINMLQSCRSVCEFEMIKKINEGTYGVVYKGRDKKTGELVALKKVKMNIERDGFPMSSLREINILLSFNHPSIVNVKEVVVDDFDGTFMVMEHMDYDLKGLMEVKKQPFSMSEIKSLMRQLLEGVRYLHDNWVIHRDLKSSNILLNHDGELKICDFGLSRQYGSPLKPYTPIVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELIAKEPLFRGKSELEQLDKIFQTLGMPDVKIWPGLSKLPGAKANFVKQPFNKLRKKFPAASFTGLPVLSELGFDLLKQLLTYDPEKRITAEDALLHDWFHEAPLPKSDFKPIFPSWQR 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1359 575 ProSiteProfiles Protein kinase domain profile. 266 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1359 575 PANTHER CELL DIVISION PROTEIN KINASE 66 574 - -
Aed6g1359 575 MobiDBLite consensus disorder prediction 151 172 - -
Aed6g1359 575 MobiDBLite consensus disorder prediction 148 252 - -
Aed6g1359 575 MobiDBLite consensus disorder prediction 85 118 - -
Aed6g1359 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 385 397 IPR008271 GO:0004672|GO:0006468
Aed6g1359 575 CDD STKc_CDC2L1 260 556 IPR045267 GO:0004674|GO:0005524|GO:0006468
Aed6g1359 575 MobiDBLite consensus disorder prediction 176 196 - -
Aed6g1359 575 Pfam Protein kinase domain 266 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1359 575 SUPERFAMILY Protein kinase-like (PK-like) 260 561 IPR011009 -
Aed6g1359 575 SMART serkin_6 266 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1359 575 PANTHER CYCLIN-DEPENDENT KINASE 66 574 - -
Aed6g1359 575 MobiDBLite consensus disorder prediction 197 232 - -
Aed6g1359 575 Gene3D Transferase(Phosphotransferase) domain 1 348 566 - -
Aed6g1359 575 Gene3D Phosphorylase Kinase; domain 1 253 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1359 Aed-Chr6 18248472 18253307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1359 261 562 Core Cell Cycle Gene Families AT5G10270 44.654 4.08e-85 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Aed6g1359 Pkinase 1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1359 K08818 - gmx:100788840 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1359 6 18248472 18253307 Aed6g1359 6 18248472 18253307 ECH