Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1356 ATGGCCACTTGCACCTCTCTGTCTCTCTGTCCTCACACTTTCTGTTGCCGCCACCGCCCTTATCCCACGCGCCGTTCCCTCGCGTGCTCTCTCTCCTCTTCTTCCCTCCCAGATACGGATGGACCTAAAGTACTGCGTAAAAGATCATCGAAAAGAATAGAAGGTCCTAAAAAGAGCATGGAAGACTCTGTTCAACGCAAAATGGAGGAATTCTACGAAGGACGGGATGGGCCACCTCTCAGAGTTCTTCCAATTGGTGGGTTGGGTGAAATTGGAATGAATTGCATGCTTGTTGGCAACTATGATCGCTATATCCTCATTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGGGTCCAAAAGATCATACCTGATACAACATTTATAAGAAAATGGAGACACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGACCATATTGGCGCATTGCCTTGGGTAGTCATCCCAGCATTAGATTCTCATACGCCAATTTTTGCATCATCCTTTACAATGGAGCTTATAAGAAAACGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTCAAAGTATTTAGAACCAAGAAGAAGTTTATGGCTGGGCCATTTGAGGTAGAGCCTATCACAGTGACTCATTCTATTCCTGATTGTTGTGGACTAGTGCTCCGTTGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGATGAAACACCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCAAAAGAAGGAGTCACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAATCAGTGAATCTGTTGTGGCAGATTCATTATTGAGGAATATTTCAGCTGCTAAAGGAAGGGTTATAACAACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACGGGTAGAAAGTTGGTATTTGTTGGCATGTCATTAAGAACATATTTAGAGGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCTACTCTGGTGAAAGCGGAAGATATTGATGCTTATGCACCAAAGGATTTACTTATTGTAACGACAGGCTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGTCATTCTGTCAAGCTGACAAAGGAAGATATTCTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGAGATTGGACCAACTATAATTATGGGGAAGAATGAATGCCTGCACACGTCTGGTCATGGGTATCGTGGAGAATTAGAGGAAGTACTTAGAATTGTGAAGCCACAGCATTTTCTACCCATACATGGTGAACTCTTGTTCTTGAAGGAGCATGAATTACTTGGAAAATCAACTGGCATTCGGCACACAACTGTTATTAAGAATGGAGAGATGCTAGGTGTTTCTCATTTGAGAAATAGAAGGGTCCTTTCTAATGGTTTCATTTCACTTGGAAAAGAGAATTTGCAGTTGATGTATAGTGATGGCGAAAAAGCATTTGGTACATCAAGTGAACTCTTTATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATAGTGGTTAGCATGGAAATTTTTCGCCCTCAAAATTTAGACAGTCCAGTTGAGAACACCTTAAAAGGAAAAATAAGAATTACCACCAGGTGCCTGTGGCTTGACAAGGGGAAGCTGTTGGATGCACTCCATAAAGCTGCTCATGCAGCTCTTGCTAGTTGCTCTGTAAGCTGTCCACTGGCTCATATGGAAAGAATTGTGTCTGAGATGTTGAGAAAAATGGTGAGGAAGTACAGTGGCAAACGACCTGAAGTTATTGCCATAGCCATAGAAAATCCTGCAGCTGTTCTTGCTAATGAGATAAACACTAAGTTGTCTGGAAAATTCAATGTGGATGGACATGGGAAAGAAAATCAGAGAACCAAAATGCAAATAAGAGATTGTGTTGATGTAGGTGGTCTACTACCTACTGAAGACAACGCTATCTCAAGTGGGGCTGAGGATAGCTTGTCTGATGCAGAGGATCCAAATGATTATTTTAAACCATTTGTTGATTCCTCTCCAGTTGAGAAGTCAATTAAAGCTAACAATGGTTATGTTCCACATAAGGAGAAGTTGTCCCCATTGAAAGATGATGGTTCTGAAGACACTGAAGAATGCAATTCTGTAAATACATCAAATTCTGAACCTAAATCTTCAAAATCAGCAAAGAGAAATAAATGGAAACATGAAGAAGTTACGAAGCTGATTGGTATGCGTGGGGAACTGAATGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGGCTAATGGGATCAGCAGAAGTCCTGGGCAGTGTAAATCTCTGTGGACATCTTTGTTACAGATATATGAGCAGGAGGTGAAGAATGAGAAGAACAGGAAAAAATGGCCGTATCTTGAGGACATGGAAAGGATTCTTCTGTCTGATAACGAGGCACTAGCAGCAAAATGA 2586 0.4118 MATCTSLSLCPHTFCCRHRPYPTRRSLACSLSSSSLPDTDGPKVLRKRSSKRIEGPKKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVIITHGHEDHIGALPWVVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTKKKFMAGPFEVEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADSLLRNISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSVKLTKEDILLYSAKVIPGNESRVMEMLNRISEIGPTIIMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLMYSDGEKAFGTSSELFIDERLRIALDGIIVVSMEIFRPQNLDSPVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALASCSVSCPLAHMERIVSEMLRKMVRKYSGKRPEVIAIAIENPAAVLANEINTKLSGKFNVDGHGKENQRTKMQIRDCVDVGGLLPTEDNAISSGAEDSLSDAEDPNDYFKPFVDSSPVEKSIKANNGYVPHKEKLSPLKDDGSEDTEECNSVNTSNSEPKSSKSAKRNKWKHEEVTKLIGMRGELNDRFQVVKGRMALWEEISQNLLANGISRSPGQCKSLWTSLLQIYEQEVKNEKNRKKWPYLEDMERILLSDNEALAAK 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1356 861 CDD GT1 767 829 - -
Aed6g1356 861 CDD RNaseJ_MBL-fold 83 495 - -
Aed6g1356 861 Gene3D - 84 497 IPR036866 -
Aed6g1356 861 MobiDBLite consensus disorder prediction 41 60 - -
Aed6g1356 861 Gene3D - 282 432 IPR042173 -
Aed6g1356 861 SMART Lactamase_B_5a 92 290 IPR001279 -
Aed6g1356 861 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 861 - -
Aed6g1356 861 SUPERFAMILY Metallo-hydrolase/oxidoreductase 80 495 IPR036866 -
Aed6g1356 861 Pfam Myb/SANT-like DNA-binding domain 766 850 IPR044822 -
Aed6g1356 861 MobiDBLite consensus disorder prediction 687 768 - -
Aed6g1356 861 MobiDBLite consensus disorder prediction 31 60 - -
Aed6g1356 861 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 479 IPR011108 -
Aed6g1356 861 Gene3D - 769 830 - -
Aed6g1356 861 PANTHER RIBONUCLEASE J 1 861 - -
Aed6g1356 861 Pfam Beta-lactamase superfamily domain 103 240 IPR001279 -
Aed6g1356 861 ProSiteProfiles Myb-like domain profile. 761 825 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1356 768 853 Trihelix Transcription Factor Family AT2G38250 35.227 3.49e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aed6g1356 Lactamase_B_2 1.2e-09 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1356 - - gmx:100814619 1553.88