Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1355 ATGCATATTGATGCAGCAGAGAGTAGTGAGATATCGTCGATGGTGCAGGTGGTGGGAGAAGAGAGAGAGGCAGTGGTGGCATGCAGTGACAAGAGCATGAAGATAGGGGCTACGATGTGGGACTTGGAAACAGGAGAAAAACTGTTTCACATACCAACCTGTGCCTCGCCACCTTTCGGCTTCTTGTGCTTCAGAAACCGCTTCCTCGTGGCGTCTCAATCCAACAAACACGGGTCTGTTGGCGACGGAGCCATTGCACTCTGGTCCTTCAATAAGCCTCAACAGCCACTTTTGAATTACACAGTGGAGGCTATTGGGCCACTTTCTTGTACACATGATGGCATATACCTCGTGGGAGGGGCTTTGTCTGGAAAAGCTTATCTATGGGATGTGACCAATGGAAAAATGTTGAAGACTTGGAGGGCTCATAATAAATCTTTAAACTGCATGATATTTTCAGATGACAATTCTTTTCTTATTTCTGGTTCAGATGATGGAATGATCTGTGTTTGGCCCATGATTAGTCTGTTAGATGTAGAAGACACAAGAAGCTCGCAGCCTCCATTACATTGTTTGTTAGGGCACATGGCTTCCATAACAGGTCTTTTAACTACACCAAACAATTACTTCTCAATGTTAGTGTCAAGCTCCCTTGATGGCACATGCAAGGTTTGGGATTTTGTCTCAGGAAAGCTTGTGCAAACTGAAGTTTATCCTTTTGCAATAACTTCCATGGCCCTTCACCAAAGCGAAAGGCTTTTGTTTTGCGGAACAGAAAAGGGAACAATAATTGTTAACAAGCTTGATGTTGGTCAGGAAGAAGGTCCTTCCATTATTGTCAATGGAGGCCAACAACCACTTGAAATGAAAGGACACAACGGAGCCATTACTGCCTTGACATCCTCTCGGGCATGCCTAATATCTGCCTCTGAAGATTGCTCTATCTGTGTCTGGGATATCTTCAGTTGGGAAATCATTCAAAGTTTCAGTCTTCAAAAAGAAGGGAGAGTAACTAATCTTGTGGTAGTTTCACGGTCCTCGTTGCTCCCTACACCAAACCACCGGAGAGTCCCCACTCAATATCATGTTTCTCAACTTGACAAGTATCCTCAGGCTCAGCTGAACAACTCATTCGAGGGAACTACCACTCTCCTTTCCTTATCTCCACTCTACAAAGGAAATCAAATACAAAGTTGCACTGATATGACAAGTACTGCAATTGCAAAGAAAGCAGATCTGCCTATGGCCATGGAAACACAAATGAAAGTGGAAACAAATGTAGAGAGTCGTGTATGGGCTACAAACATGGCAAAGCATGTCATGGTGATGAATAAACAGCTGAAGTCACAACTAGTGGACATGATGCAACGCAGATTGTTTCGTCCAAACAACATAAACTTGCCAAAAAATGGTAGAAAAAAGCTCAAAATTCAGAGTCTGGTGCAGGAAGAGGAAGATCAGAAACCTTAG 1470 0.4361 MHIDAAESSEISSMVQVVGEEREAVVACSDKSMKIGATMWDLETGEKLFHIPTCASPPFGFLCFRNRFLVASQSNKHGSVGDGAIALWSFNKPQQPLLNYTVEAIGPLSCTHDGIYLVGGALSGKAYLWDVTNGKMLKTWRAHNKSLNCMIFSDDNSFLISGSDDGMICVWPMISLLDVEDTRSSQPPLHCLLGHMASITGLLTTPNNYFSMLVSSSLDGTCKVWDFVSGKLVQTEVYPFAITSMALHQSERLLFCGTEKGTIIVNKLDVGQEEGPSIIVNGGQQPLEMKGHNGAITALTSSRACLISASEDCSICVWDIFSWEIIQSFSLQKEGRVTNLVVVSRSSLLPTPNHRRVPTQYHVSQLDKYPQAQLNNSFEGTTTLLSLSPLYKGNQIQSCTDMTSTAIAKKADLPMAMETQMKVETNVESRVWATNMAKHVMVMNKQLKSQLVDMMQRRLFRPNNINLPKNGRKKLKIQSLVQEEEDQKP 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1355 489 Gene3D - 3 237 IPR015943 GO:0005515
Aed6g1355 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 171 IPR001680 GO:0005515
Aed6g1355 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 328 IPR001680 GO:0005515
Aed6g1355 489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 140 171 - -
Aed6g1355 489 SUPERFAMILY WD40 repeat-like 40 341 IPR036322 GO:0005515
Aed6g1355 489 ProSitePatterns Trp-Asp (WD) repeats signature. 213 227 IPR019775 -
Aed6g1355 489 PANTHER WD-REPEAT PROTEIN 18 21 479 IPR045227 -
Aed6g1355 489 SMART WD40_4 185 226 IPR001680 GO:0005515
Aed6g1355 489 SMART WD40_4 93 130 IPR001680 GO:0005515
Aed6g1355 489 SMART WD40_4 282 319 IPR001680 GO:0005515
Aed6g1355 489 SMART WD40_4 229 267 IPR001680 GO:0005515
Aed6g1355 489 SMART WD40_4 133 172 IPR001680 GO:0005515
Aed6g1355 489 PRINTS G protein beta WD-40 repeat signature 213 227 IPR020472 -
Aed6g1355 489 PRINTS G protein beta WD-40 repeat signature 159 173 IPR020472 -
Aed6g1355 489 PRINTS G protein beta WD-40 repeat signature 306 320 IPR020472 -
Aed6g1355 489 Gene3D - 238 351 IPR015943 GO:0005515
Aed6g1355 489 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 21 479 - -
Aed6g1355 489 Pfam WD domain, G-beta repeat 135 171 IPR001680 GO:0005515
Aed6g1355 489 Pfam WD domain, G-beta repeat 288 319 IPR001680 GO:0005515
Aed6g1355 489 Pfam WD domain, G-beta repeat 188 226 IPR001680 GO:0005515
Aed6g1355 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 235 IPR001680 GO:0005515
Aed6g1355 489 ProSitePatterns Trp-Asp (WD) repeats signature. 306 320 IPR019775 -
Aed6g1355 489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1355 Aed-Chr6 18219620 18225899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1355 95 329 U-box Gene Family AT2G33340 23.750 1.60e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1355 K14829 - gmx:102662801 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1355 6 18219620 18225899 Aed6g1355 6 18219620 18225899 ECH