Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed6g1346 | ATGGTTTCGACGAGACGCAGTGGATCTCTCTCTGCCAAAAGATCTTCCACCTCGGAAGATAAACCTCCTTCGCCGAAGCGTCAAAAGGTCGACAATGGCGGTTCGTCGGAGAAACCGGTGCCGACTCCGGCGGAGAATTCCAAGGACTTATCTACTCCGGACCCCGTGCCTGATCCCGGAGAATGTGGCTCCGGCGACGCTCAGATCGCCGGAGCTGGTGCTGCCGATGGAGTGAGCTCCGGCAAGGGTGACGCTACGCCGGCTGTGCCTGTCACGGCACCGACTGCTGATGCCGCATGTCCATCGTTCTCTTCTTGGATTAATTATCAGAAACAGAATCCGATTATCGAGGGTGCGCCGTGGTGCAGGTTCTTGTCTCAGTCTGCACAGAATCCTAACGTTGCTGTTTGCACTCCCAATTTCACGATTGGTTCTAATAGAAGTTGCAACTTTCCACTGAATGATCAAACTATAAGTGGAAATTTATGCAAGATCAAATATATGCAGGGCGACGGAAGTGCTGTGGCTGTGCTGGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTAAATGGGACGCATGTCAAGAAGAATACCAGTTGTGTTCTTAACTCGGGTGATGAAGTGGTTTTTGGTGTGCTTGGAAATCATTCTTATATTTTCCAGCAACTAAATACCGAGGTTGCAGTTAGGGGTGCAGAAGTTCCAAGTGGTATTGGGAAATTTCTGCCACTTGAAAGGAGAAGTGGAGACCCTTCAGCTGTGGCTGGGGCTTCTATTTTGGCTTCTCTTTCTAACAGACAGGACCTTACAAGATGGAAATCTCCATCTCAGACCTCCACTAAACCTCACCAGGGTACCGATGTCTCTAGTCATTCTGTTCATCATGATTGTACAGAAACTGAGCTTGATGGCTCAGAATCAACTCCAAACGTGCGAAGTGATAAAGCAGTAGATGTTCGAACAAGTGACAAGAATTCAACAATGGATTGCGATCCAGATGCTGGTGCAGAGGCAGGCAATGTAAAAATCTCTGGGGTGAATGATTTCCTAAGGCCTTTCTTCAGGATCTTAGCTCGACCTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTATTGGAAGAAAGAAATGGGATGCTGGATATGCAGGCTGCATCGACTTTGGGTACATCTGTCCGCTGTGCAGTGTTTAAAGAAGATGTTCATGCTGCGATACTGGATGGAAAAGAAATAGATGTTTCTTTTGACAACTTCCCTTACTATTTAAGTGAGAATACAAAAAATGTCCTGGTGGCTGCTTGCTTTATGCACCTCAAGCATAAAGAACATGAAAAGTTTACTGCAGATCTTACAACCATAAACCCTCGTATTCTTCTCTCTGGACCTGCAGGGTCTGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAATACTTTGGAGCTAAGTTGCTCATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAAGATGGATTTAGTGCTGAAAAATCTTCCAGCTGCACTAAACAAAGTCCTACAGAAGACTTGGCTAGGAGCATAGACCCATTAGCTAGTGAAACAGAGACACCCAGCCCTTCTAATGCACCTACATCATATGGCTTTGAGTCTCAACCTAAGTTGGAAACTGATAACATACCATCCACCTCTGGGACAGCTAAAAGTTGTGTGTACAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTGGTGTATATCCGACATCTCCAAGAGGACCGTCTAATGGAAGTCGGGGCAAGGTTGTCTTACTGTTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAATCCATACCTGATGGAGTTGATCTTGGTGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCACTGATCTTCGTTTGGAAAGCAGTGCGGGAGATGAACTGGATAAATTACTTATTCATTCATTGTTTGAGGTTGTTTTTAGTGAGAGTAGAAGTGCACCATTCATTTTGTTCATGAAAGATGCAGAGAAGTCTATTGTAGGAAATGGAGATTCATATTCATTTAGAAGTAAGCTTGAAAATCTTCCAGACAATGTGGTTGTAATAGGTTCGCACACTCAAAATGACAGTCGCAAGGAAAAGTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCGGATAGTTTTGGACGATTGCATGACAGAGGGAAGGAAGTCCCGAAACAAAGTAGATCTTTGACTAAGCTTTTTCCAAATAAAATTACAATTCATCTGCCACAGGACGAGGCTCTTCTAGCATCTTGGAAGCAGCAACTGGATCGAGATGTCGAGACTCTCAAAATCAAAGGAAATTTGCATCACTTGCGCACAGTTTTGGGACGCTGCGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATTAAGGATCAGACACTTACAAATGAAAATGCGGAGAAGATAATTGGTTGGGCTTTAAGCCACTACCTCATGCAGAATTCAGAAGCTAAGCCTGATTCAAAGCTTGTATTGTCATGTGAGAGCATTCAGTATGGAATTGGGATCTTGCAGTCTATCCAGAATGAGTCCAAGAGCCTGAAGAAATCTCTTAAGGATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAGTGACATTGATGTTACTTTTGATGATATTGGAGCTCTTGAAAAAGTCAAGGATACATTGAAGGAGTTGGTGATGCTTCCTTTACAGAGACCTGAGCTTTTTTGCAAGGGGCAATTAACTAAGCCGTGCAAAGGTATCCTATTATTTGGTCCCCCTGGAACAGGTAAAACAATGCTCGCAAAGGCAATTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCTATGTCAAGTATTACATCTAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTTTGGCGAGTAAAATTTCACCTAGTGTTATCTTTGTTGATGAGGTTGACAGCATGTTGGGTCGGAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGTACGAAGGAAACAGAGCGAGTTCTTGTGCTGGCAGCCACTAATAGGCCTTTTGACCTTGATGAGGCTGTCATAAGGAGGATGCCAAGAAGATTGATGGTAAATTTGCCAGATGCTCCTAATAGAGCAAAAATATTGAAAGTTATACTAGCAAAAGAGGAAATGTCTCCTGATGTTGATTTAGATACAGTTGCAAATATGACCGATGGATATTCTGGAAGTGATCTTAAGAATTTGTGTGTAACTGCAGCACATCGCCCTATTAAAGAGATATTAGAAAAGGAAAAAAAGGAATGTGTTGCTGCTCTAGCCGAAGGTCGACCAGCTCCAGCATTATGCAGCAGTGGAGACGTCAGATCTTTAAACATGGAAGACTTTAAACATGCTCATCAGCAGGTATGTGCAAGTGTTTCTTCTGAATCAGTAAATATGACTGAGCTTTTACAATGGAATGAATTATATGGAGAGGGGGGTTCAAGAGTAAAGAAAGCACTCAGCTATTTCATGTGA | 3675 | 0.4302 | MVSTRRSGSLSAKRSSTSEDKPPSPKRQKVDNGGSSEKPVPTPAENSKDLSTPDPVPDPGECGSGDAQIAGAGAADGVSSGKGDATPAVPVTAPTADAACPSFSSWINYQKQNPIIEGAPWCRFLSQSAQNPNVAVCTPNFTIGSNRSCNFPLNDQTISGNLCKIKYMQGDGSAVAVLESTGSKGSVLVNGTHVKKNTSCVLNSGDEVVFGVLGNHSYIFQQLNTEVAVRGAEVPSGIGKFLPLERRSGDPSAVAGASILASLSNRQDLTRWKSPSQTSTKPHQGTDVSSHSVHHDCTETELDGSESTPNVRSDKAVDVRTSDKNSTMDCDPDAGAEAGNVKISGVNDFLRPFFRILARPSCKLKLSKSICKQVLEERNGMLDMQAASTLGTSVRCAVFKEDVHAAILDGKEIDVSFDNFPYYLSENTKNVLVAACFMHLKHKEHEKFTADLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGFSAEKSSSCTKQSPTEDLARSIDPLASETETPSPSNAPTSYGFESQPKLETDNIPSTSGTAKSCVYKLGDRVKFSCSSSCGVYPTSPRGPSNGSRGKVVLLFDDNPLSKIGVRFDKSIPDGVDLGGACEGGQGFFCNVTDLRLESSAGDELDKLLIHSLFEVVFSESRSAPFILFMKDAEKSIVGNGDSYSFRSKLENLPDNVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKQSRSLTKLFPNKITIHLPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLGRCGMECEGLETLCIKDQTLTNENAEKIIGWALSHYLMQNSEAKPDSKLVLSCESIQYGIGILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEEMSPDVDLDTVANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKECVAALAEGRPAPALCSSGDVRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM | 1224 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed6g1346 | 1224 | MobiDBLite | consensus disorder prediction | 1 | 89 | - | - | |
Aed6g1346 | 1224 | PANTHER | AAA-TYPE ATPASE FAMILY PROTEIN-RELATED | 74 | 1224 | - | - | |
Aed6g1346 | 1224 | ProSitePatterns | AAA-protein family signature. | 1063 | 1082 | IPR003960 | GO:0005524|GO:0016887 | |
Aed6g1346 | 1224 | MobiDBLite | consensus disorder prediction | 535 | 569 | - | - | |
Aed6g1346 | 1224 | Pfam | ATPase family associated with various cellular activities (AAA) | 960 | 1089 | IPR003959 | GO:0005524|GO:0016887 | |
Aed6g1346 | 1224 | Gene3D | - | 120 | 229 | - | - | |
Aed6g1346 | 1224 | MobiDBLite | consensus disorder prediction | 270 | 333 | - | - | |
Aed6g1346 | 1224 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Aed6g1346 | 1224 | SUPERFAMILY | SMAD/FHA domain | 108 | 221 | IPR008984 | GO:0005515 | |
Aed6g1346 | 1224 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 918 | 1201 | IPR027417 | - | |
Aed6g1346 | 1224 | SMART | AAA_5 | 956 | 1093 | IPR003593 | - | |
Aed6g1346 | 1224 | MobiDBLite | consensus disorder prediction | 288 | 302 | - | - | |
Aed6g1346 | 1224 | Coils | Coil | 880 | 900 | - | - | |
Aed6g1346 | 1224 | MobiDBLite | consensus disorder prediction | 19 | 33 | - | - | |
Aed6g1346 | 1224 | Gene3D | - | 1092 | 1186 | - | - | |
Aed6g1346 | 1224 | ProSiteProfiles | Forkhead-associated (FHA) domain profile. | 141 | 194 | IPR000253 | GO:0005515 | |
Aed6g1346 | 1224 | Pfam | FHA domain | 142 | 211 | IPR000253 | GO:0005515 | |
Aed6g1346 | 1224 | Pfam | AAA+ lid domain | 1113 | 1148 | IPR041569 | - | |
Aed6g1346 | 1224 | CDD | AAA | 958 | 1091 | - | - | |
Aed6g1346 | 1224 | CDD | FHA | 141 | 221 | IPR000253 | GO:0005515 | |
Aed6g1346 | 1224 | MobiDBLite | consensus disorder prediction | 270 | 287 | - | - | |
Aed6g1346 | 1224 | Gene3D | - | 918 | 1199 | IPR027417 | - | |
Aed6g1346 | 1224 | PANTHER | AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED | 74 | 1224 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed6g1346 | Aed-Chr6 | 18148581 | 18161074 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed6g1346 | 919 | 1167 | Calmodulin-binding Proteins | AT3G56690 | 39.062 | 8.09e-41 | 162 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed6g1346 | - | - | gmx:100816731 | 2264.19 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aed6g1346 | 6 | 18148581 | 18161074 | Aed6g1346 | 6 | 18148581 | 18161074 | ECH | |
Aed6g1346 | 6 | 18148581 | 18161074 | Aed10g0815 | 10 | 6761932 | 6772252 | PCT |