Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1333 ATGGCCACCACAACAAGGTCACCGAACCGTTCCTCCGAGGACGCCGCCGATCCGACGCCGTTCCTCGGGACTTCATCCGATGACTCCACCTCCGGCCGCCGTCTCCTCCGCCGCCCGAGCCTCCGCGAGGCTGCGCGCTTCCTGCGCCAGGCCAGCGGCCGCCGCTTGATGCGCGAGCCGTCCATGGTGGTGCGGGAGGCGGCGGCGGAGCAACTCGAAGAGAGGCAGAGCGATTGGGCCTATTCCAAGCCCGTCGTCATCTTGGACATTCTCTGGAACTTCGCCTTCGTCGCCGCCGCCGCCACCGTCTTGATTCTCAGTTGCAACGAGAATCCCAACATGCCTCTCAGGTTGTGGATTGTAGGCTACGCTCTCCAGTGCGTTCTTCACGTCGGGTGCGTCTGCGTCGAGTTTCGGCGGCGCCTCCGCCGCCGCGAACAGTCCAACGCCGCCGTCGCGGGTGGCGGTAGCGGGGATTTGAGTCCAACTTCGATCGACGGCTCTGGACACTACGTGTCGCTGTCGCAGTACGACGACGATGGTATAAGTATGGCAAAGCATTTGGAATCAGCCAACACAATGTTTTCGTTTATTTGGTGGGTTGTTGGATTCTACTGGGTCTCAGCTGATAGTGAAGCTTTGGTCCGAGATTCTCCTCTGCTCTACTGGTTATGTATAGCCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTATTGCACTAGCATGCATCATTGGTATTGCCGTTTGCTGTTGTCTTCCATGTATCATTGCACTCCTGTATGCAGTTGCAGACCAGGAAGGGGCATCAAAAGAAGACATTGAGCAGTTGTCAAAATTCAAGTTCCAAAGAACTGAAACAAAGGAGAAACTTGGTGGGAATACACAAGAAGCTGCTGGAGGAATAATGATTGAAAGTGACACTGATTCTCCCATTGAACATGTTCTTTCTGGCGAGGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGAAGATGGGGTTGAACTTAGACAACTTCCTTGCAGCCACCATTTTCACTGTACCTGTGTGGACAAATGGCTGCATATCAATGCTACTTGCCCCCTCTGCAAGTTCAACATCTTGAAGAGTTCCAGTCATGGTCAAGACGAAGTGTAG 1140 0.5368 MATTTRSPNRSSEDAADPTPFLGTSSDDSTSGRRLLRRPSLREAARFLRQASGRRLMREPSMVVREAAAEQLEERQSDWAYSKPVVILDILWNFAFVAAAATVLILSCNENPNMPLRLWIVGYALQCVLHVGCVCVEFRRRLRRREQSNAAVAGGGSGDLSPTSIDGSGHYVSLSQYDDDGISMAKHLESANTMFSFIWWVVGFYWVSADSEALVRDSPLLYWLCIAFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFQRTETKEKLGGNTQEAAGGIMIESDTDSPIEHVLSGEDAECCICLSAYEDGVELRQLPCSHHFHCTCVDKWLHINATCPLCKFNILKSSSHGQDEV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1333 379 CDD RING-H2_RNF111_like 323 367 - -
Aed6g1333 379 MobiDBLite consensus disorder prediction 1 30 - -
Aed6g1333 379 Pfam Ring finger domain 323 365 IPR001841 -
Aed6g1333 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 373 IPR013083 -
Aed6g1333 379 SMART ring_2 324 364 IPR001841 -
Aed6g1333 379 PANTHER TARGET OF ERK KINASE MPK-1 3 379 - -
Aed6g1333 379 MobiDBLite consensus disorder prediction 1 38 - -
Aed6g1333 379 ProSiteProfiles Zinc finger RING-type profile. 324 365 IPR001841 -
Aed6g1333 379 SUPERFAMILY RING/U-box 314 371 - -
Aed6g1333 379 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1333 Aed-Chr6 18027382 18033132 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1333 19 374 C3H Transcription Factor Family AT1G68070 49.584 1.95e-117 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1333 - - gmx:100779757 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1333 6 18027382 18033132 Aed6g1333 6 18027382 18033132 ECH
Aed6g1333 6 18027382 18033132 Aed11g1698 11 20660364 20663737 PCT