Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1332 ATGACGTCATCATCAAGCAACGACTACGACGTGCCATGGGTTGAGAAGTACCGTCCCAGCAAGATCGCCGACATCGTCGGCAACGACGACGCCGTTTCCAGACTCCAAGTCATCGCTCGCGACGGCAACATGCCCAATCTCATTTTATCCGGTCCTCCCGGGACCGGAAAAACCACCAGCATACTCGCCCTCGCGCACGAGCTTCTCGGAGGACCAAATTGCAAGGAGGCCGTTCTCGAACTTAACGCATCGGATGATAGAGGAATTGATGTTGTGAGGAACAAGATTAAGATGTTTGCTCAGAAGAAAGTCACACTGACCCCGGGGAGGCACAAAATAGTAATACTGGATGAAGCTGATAGCATGACCGCAGGAGCACAGCAAGCACTGAGAAGGACAATGGAGATATATTCAAACACTACTCGGTTTGCTCTTGCGTGCAATACCTCGGCTAAGATTATTGAGCCCATTCAGAGTAGATGTGCCATTGTGCGATTTTCACGATTGTCTGATCAAGAGATACTTGGTCGACTCATGGTTGTGGTTCAAGCCGAGAAGGTTCCCTACGTTCCTGAAGGACTTGAAGCCATCATTTTCACTGCTGACGGTGATATGAGACAGGCATTGAATAACTTGCAAGCAACATACAGTGGGTTCCAATTTGTTAACCAAGCAAATGTTTTCAAGGTTTGTGACCAGCCACATCCACTGCATGTGAAGAACATAGTGCGTAATGTGATTGAAGGGAATTTTGATGATGCTTGTTCGGGCCTCAAGCAACTGTATGACTTGGGATATTCTCCCACAGATATCATCACCACACTTTTTCGTATAATAAAAAATTATGATATGGCTGAGTACCTGAAATTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGTTCTTATCTTCAGATGTGTGGTTTATTGGCTAAGCTTTCTATAGTTCGTGAGACGGCTAAAGCTGTATGA 993 0.4582 MTSSSSNDYDVPWVEKYRPSKIADIVGNDDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDEADSMTAGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNIVRNVIEGNFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQMCGLLAKLSIVRETAKAV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1332 330 PANTHER REPLICATION FACTOR C SUBUNIT 2 5 328 - -
Aed6g1332 330 SUPERFAMILY post-AAA+ oligomerization domain-like 233 324 IPR008921 GO:0003677|GO:0006260
Aed6g1332 330 CDD AAA 26 164 - -
Aed6g1332 330 SMART AAA_5 43 170 IPR003593 -
Aed6g1332 330 Pfam ATPase family associated with various cellular activities (AAA) 47 166 IPR003959 GO:0005524|GO:0016887
Aed6g1332 330 Pfam Replication factor C C-terminal domain 234 319 IPR013748 -
Aed6g1332 330 Gene3D - 170 233 - -
Aed6g1332 330 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 5 328 - -
Aed6g1332 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 231 IPR027417 -
Aed6g1332 330 CDD HLD_clamp_RFC 169 231 - -
Aed6g1332 330 Gene3D - 234 326 - -
Aed6g1332 330 Gene3D - 4 169 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1332 Aed-Chr6 18023465 18026028 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1332 9 329 Core DNA Replication Machinery Family AT1G63160 91.900 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1332 K10755 - gmx:100781364 639.802