Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1323 ATGGCATCGTCATCATCATCGAAGAGGCATCCAGTGTACCATGGAATCCGTTGCCGCGGAGGAAAATGGGTTACCGAAATCCGCGAACCGAGGAAAACAAACCGCATATGGCTGGGGACGTTTCTGACGCCGGAGATGGCCGCCGCCGCCTACGACGTGGCGGCGTTGGCCCTGAAAGGCGGCGAGGCGGCTCTTAACTTCCCGGACTCGGCTGGAAAGTATCCGGTGCCCGCGTCGAAATCCCCTGCGGACATCCGCACCGCTGCCATTGCTGCAGCCGAACTCATGAAACCTGAAGCCAGCCGCCACAACAACAACAACGTTAACGAGTCAACGACAACTAATGCAGCAGTTGAATCTGATAACGCTGACTTTCATCCTCATTCGTTTGAAACTGAGTTTATGGACGAGGAAGCAATATTCTCGATGCCGAGTTTGCTTGTTGACATGGCTGGGGGAATGTTGCTATCTCCTCCCAGAATGAGCCCACCCTCCGATGACTCAACCGAAAGTTTTGTTGGAGAAACTTTGTGGAACTTTTGA 543 0.5359 MASSSSSKRHPVYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYDVAALALKGGEAALNFPDSAGKYPVPASKSPADIRTAAIAAAELMKPEASRHNNNNVNESTTTNAAVESDNADFHPHSFETEFMDEEAIFSMPSLLVDMAGGMLLSPPRMSPPSDDSTESFVGETLWNF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1323 180 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Aed6g1323 180 CDD AP2 13 70 IPR001471 GO:0003700|GO:0006355
Aed6g1323 180 PANTHER ETHYLENE RESPONSE FACTOR 1 180 - -
Aed6g1323 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 180 - -
Aed6g1323 180 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Aed6g1323 180 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Aed6g1323 180 Gene3D AP2/ERF domain 12 69 IPR036955 GO:0003700|GO:0006355
Aed6g1323 180 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1323 Aed-Chr6 17961000 17961542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1323 7 180 AP2-EREBP Transcription Factor Family AT5G52020 52.542 9.15e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed6g1323 AP2 1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1323 - - gmx:100793589 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1323 6 17961000 17961542 Aed6g1323 6 17961000 17961542 ECH
Aed6g1323 6 17961000 17961542 Aed11g1690 11 20610697 20611433 PCT