Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1322 ATGAATATTCTCGGACAATCATTGGATCAATCAAACAACGGGAGATACTCTTGTTCGTCCCCGGAGACTGCAAGCTCCTCCAACCTTCCCAACTCCGACGAGGAAATTCACACATTAGCGTCGGCGCGTCCTAAGAAACGTGCGGGGCGTCGAATTTTTAACGAAACAAGACACCCTGTGTACCGAGGAGTGCGGCGTAGGAACAACAACAAGTGGGTCTGCGAGGTTCGTGTGCCCAACGACAAGTCCACGAGAATTTGGCTCGGAACGTATCCAACTCCCGAAATGGCCGCACGTGCTCACGACGTTGCGGCGCTCGCTCTTCGAGGCAAGTCGGCTTGCCTCAACTTCGCCGACTCGGCGTGGCGCCTGCCGCTGCCGGCATCAACCAACGCGAAGGAGATTCGGCGCGTGGCAGCTGCTGCTGCTGCTGCGATTGCGGCGGAAGACATCACTTTTGAGCAGTCACGGAATGTGAATAATGATGCCGTTGCTGATAATTGCGAAGTCAGCAGCAGTGATATCAGTACTGTTGATGAAGATTCCAACAACAACAAAGGTTTGCGAGTTTTTTGTGATTTGGATGAAATTACGATGCGAGATGCATCGGTTTTTGAAGACATGCATATGCATGAGTGGCTTCAGAGTATGGCTGATGAACCTTTGCGATCGCCTACTTTTGTAACACATGTTAGAGATGTCTGGAACTTTGTGGAGGATGATGCTGCTGAGGTGTCCTTGTGGAGCTTCACCATCTAA 759 0.5125 MNILGQSLDQSNNGRYSCSSPETASSSNLPNSDEEIHTLASARPKKRAGRRIFNETRHPVYRGVRRRNNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLPLPASTNAKEIRRVAAAAAAAIAAEDITFEQSRNVNNDAVADNCEVSSSDISTVDEDSNNNKGLRVFCDLDEITMRDASVFEDMHMHEWLQSMADEPLRSPTFVTHVRDVWNFVEDDAAEVSLWSFTI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1322 252 SUPERFAMILY DNA-binding domain 60 120 IPR016177 GO:0003677
Aed6g1322 252 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
Aed6g1322 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 252 IPR045277 GO:0003700
Aed6g1322 252 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Aed6g1322 252 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Aed6g1322 252 MobiDBLite consensus disorder prediction 1 32 - -
Aed6g1322 252 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
Aed6g1322 252 Pfam AP2 domain 59 110 IPR001471 GO:0003700|GO:0006355
Aed6g1322 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 252 - -
Aed6g1322 252 CDD AP2 61 120 IPR001471 GO:0003700|GO:0006355
Aed6g1322 252 Gene3D AP2/ERF domain 60 119 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1322 Aed-Chr6 17952014 17952772 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1322 27 250 AP2-EREBP Transcription Factor Family AT5G51990 48.444 3.88e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed6g1322 AP2 8.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1322 - - gmx:100795696 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1322 6 17952014 17952772 Aed6g1322 6 17952014 17952772 ECH