Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1314 ATGGTATTATTGCATGATGGATCTTCATCAAGCAATTGCAACAGCTCGTCGTCCTTCAATATTTCACCAGAGGAGGATCACGGGTGTAGCAGTACTAGGAACAAATGGATGTCTTCAAAGATGAGGTTAATGAAAAAAATGATGAGACCACCAACTACTGACAAACCAATCAATTCAACCCCAAGATTCCAAAACCAAAGAAGCACTCCTCGTAACAACAACAACGCCAGTACTGCCACCACTAGGGTTTGTTCCGACTGTAATACAACCACTACCCCACTTTGGAGGAGTGGCCCTATGGGTCCTAAGTCTCTTTGCAATGCATGTGGAATTAGACAGAGGAAGGCAAGAAGGGCAATGGCGGAAGCTGCAAAAGGTTTGGTCACAGCTCCCTTAAACAATGCAACAAAGATCAGAGTGCATAACAAGGAATTAAAGAAGTCTCGTTCTTCAAACCATTTTTCACAGTTCAAGAATAAGTACAAGTCCACTACTACAACAACTACATCTCATCATGAGGGATCAGTGAGGAAGCTTGAATATTTCAAGGACTTCTCCATAAGGTTGAGGAGTACTAACTCCTCTGATTTTCATCAACAAGAAGTGTTTCCACGGGATGAAGTAGCTGAGGCTGCATTGCTTCTCATGGACTTATCTTGTGGAATTTTGTCTACTTTTAATTAA 684 0.4181 MVLLHDGSSSSNCNSSSSFNISPEEDHGCSSTRNKWMSSKMRLMKKMMRPPTTDKPINSTPRFQNQRSTPRNNNNASTATTRVCSDCNTTTTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAAKGLVTAPLNNATKIRVHNKELKKSRSSNHFSQFKNKYKSTTTTTTSHHEGSVRKLEYFKDFSIRLRSTNSSDFHQQEVFPRDEVAEAALLLMDLSCGILSTFN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1314 227 CDD ZnF_GATA 83 120 IPR000679 GO:0006355|GO:0043565
Aed6g1314 227 ProSiteProfiles GATA-type zinc finger domain profile. 78 114 IPR000679 GO:0006355|GO:0043565
Aed6g1314 227 MobiDBLite consensus disorder prediction 48 79 - -
Aed6g1314 227 Pfam GATA zinc finger 84 117 IPR000679 GO:0006355|GO:0043565
Aed6g1314 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 77 119 - -
Aed6g1314 227 Gene3D - 79 171 IPR013088 GO:0006355|GO:0008270
Aed6g1314 227 MobiDBLite consensus disorder prediction 53 79 - -
Aed6g1314 227 ProSitePatterns GATA-type zinc finger domain. 84 109 IPR000679 GO:0006355|GO:0043565
Aed6g1314 227 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 25 224 - -
Aed6g1314 227 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 25 224 - -
Aed6g1314 227 MobiDBLite consensus disorder prediction 1 34 - -
Aed6g1314 227 SMART GATA_3 78 129 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1314 Aed-Chr6 17891313 17892442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1314 35 223 C2C2-Gata Transcription Factor Family AT4G26150 37.681 9.33e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed6g1314 GATA 1.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1314 - - gmx:100780326 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1314 6 17891313 17892442 Aed4g1640 4 21057617 21062141 PCT