Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1306 ATGTGGGAAGAAAACATGTCGAATTTGACATCTGCATCGAGTGAAATAAGTGCTTCTTCTGGAATCAGGAATGACAACAACGGTTCTAATTCTCTCAATGCTCCTCAATATTCCTCTACTTCGATAAGTCAAGAACCACAACCTAAAAAGAAGCGAAGTCTCCCAGGTCACCCAGACCCTGATGCAGAAGTCATAGCATTGAGTCCGCATACCCTATTGGCAACAAACAGATTCGTTTGTGAGATATGTCAGAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTGCATAGAAGAGGGCACAATTTGCCGTGGAAGCTGAAGAAGAAGAACATGAATAGCAAAGAAGCGATGAGGAAGAAAGTGTATGTGTGTCCAGAGGCAACGTGCGTTCACCATGACCCCTCAAGGGCCCTTGGGGACCTCACTGGAATCAAGAAGCACTTTTTCAGGAAGCATGGCGAGAAGAAATGGAAGAGGGACAGCTTTATCACTCACAGAGCCTTCTGTGATGCCTTAGCACAGGAAAGTGGAAGAGCAGTGAACCCTCACCCTCTTCTATCAACAACAACTCATGATGTTCACACCCAATTTCATAGCCATGGCCTTCATCAGCTTCAAGCACCATCATCATCATTTCTGAAAAGAGATCAACATCATGAACATGATCATCATCATCATCACTTCAACTTATTAACTAATATTCCGTCATGGTTAACTTCTCCTCCATCATTAGTAGTAGAAGAAGCAATGCAGCACAGTACTCATCAAACCGTAAGAACCTTAGATTATTTCTCACCGTCCACAGTACCACCACAGTTATTATTCCCAACAACAACACATGTCAATAACCATGATCATCATCAATATCAAAACCAAAACCCTAACCCTAACCCTACTACTACAACAACTACAACTTTTTTGAGTTCTTTCTTCCCTTATAATTCCACTTCTTCTTCTTCTTCTTCTTCTCATCCTCACATTATGTCAGCCACTGCTTTGTTGCAAAAAGCCTCACAAATAGGAGTAGCAGCAGTGAGTAGTAGTAGTAGCAGTAGTAATGCACCTTCACAATCACAAGCACAAGCAAGACCCCACTTGTTACTGCAGCAGGTTCACGTGCCTGCAGCTGAATGTACAACAACAATAACAACAACAACCACAGGTTTTAATAATATCAATAATATGGATTCATCTTCAGCAGTTTCTGGATTAATGGTTGCTATGCCTTCACGTGAAGAAATAGTAGTAGGGACTCTTGGTCTTGGGTTTGATACTCGTGGCTTGGCATCTTGA 1293 0.423 MWEENMSNLTSASSEISASSGIRNDNNGSNSLNAPQYSSTSISQEPQPKKKRSLPGHPDPDAEVIALSPHTLLATNRFVCEICQKGFQRDQNLQLHRRGHNLPWKLKKKNMNSKEAMRKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWKRDSFITHRAFCDALAQESGRAVNPHPLLSTTTHDVHTQFHSHGLHQLQAPSSSFLKRDQHHEHDHHHHHFNLLTNIPSWLTSPPSLVVEEAMQHSTHQTVRTLDYFSPSTVPPQLLFPTTTHVNNHDHHQYQNQNPNPNPTTTTTTTFLSSFFPYNSTSSSSSSSHPHIMSATALLQKASQIGVAAVSSSSSSSNAPSQSQAQARPHLLLQQVHVPAAECTTTITTTTTGFNNINNMDSSSAVSGLMVAMPSREEIVVGTLGLGFDTRGLAS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1306 430 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Aed6g1306 430 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 8 158 - -
Aed6g1306 430 MobiDBLite consensus disorder prediction 1 63 - -
Aed6g1306 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Aed6g1306 430 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 158 383 - -
Aed6g1306 430 MobiDBLite consensus disorder prediction 1 48 - -
Aed6g1306 430 SMART c2h2final6 78 100 IPR013087 -
Aed6g1306 430 SMART c2h2final6 122 152 IPR013087 -
Aed6g1306 430 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 158 383 - -
Aed6g1306 430 Gene3D Classic Zinc Finger 59 132 - -
Aed6g1306 430 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 158 - -
Aed6g1306 430 MobiDBLite consensus disorder prediction 282 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1306 Aed-Chr6 17822897 17827537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1306 3 186 IDZ Gene Family AT1G55110 57.919 8.36e-77 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1306 K25870 - gmx:100807813 434.876