Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1281 ATGAGTTTCAAGAACAGCCCTAAAATTCAGCACAATCCATACCTATCTCGCCATTCATCCAATTCTAGTTTTAGGGCAAAACCACAGAAGAACGTGGAGCCACCAAGCCCTCCTTTACCTGTTGGATGCTGCAGAGGCTTCAGCAATGTCAAGACTACAGGGTCCTCTGCCTCCACATCACAACAAAATATGCACCAGCTGCAATACCAAAGGCTGGAAGTAAAGGTGGCAGATTTGGAAAAGGAAGTGCAAAAGCAAACAGAGCTACGAGTGATGTACAGGAAAAGAATGGAAAGGACCCAAGACTACTTGAGGCACTGCCTTCAGATAGCACAGGAAAATGGAATATTAGATCTCATTGTCACCTCCAAAGGTGAAGAACTTCAACAATCCCCAGTGTCTGTCTACACCATCAGCTCCATTACCAGCCCTCAAATTCAAATTCCCACTCCACCACACCATGCCCACCACCACCACCCCAGTCTAACAGCAATCATAGATCAAGCAAAAATCAATGGATGGTATATTGATCCAAATGAGATTCAATTGGAAGAGAAAATCGGGGAAGGAAGCACCGCAGAGATTCACAGAGGAACATGGCGTGGACTTGAGGTAGCAGTGAAGTGCATATCACAAGAGTTCTTCGACACGAACCAAAACGGCGTCGCATACTTCTCCCAGGAGCTCGAAACGCTGTCGCGGCAACGCCACAGGTTCGTGCTTCAGCTGATGGGCGCGTGCATCGACCCTCCGCGGCGCGCGTGGGTGGTCACGGAGTATCTGGGCTCCACGCTGAAGGAGTGGCTTCACGGGCCTGGGACCAGGCGCAGAGAGCGAATGATTGCCATGGAAGTTGTGGAGGGTAAGCTACGACCTAAGGTTCCGTGTGATGATGCTGGTGAACTGGGAGAGCTTATTGAACTTATTTGCCTTTGTTGGGACAAGAATCCATCTACTCGACCATCCTTTGCTACAATCACCCTTTGCCTCAAAACTTATGCTAAGAAGAAGAATCTCCTTTAA 1023 0.4868 MSFKNSPKIQHNPYLSRHSSNSSFRAKPQKNVEPPSPPLPVGCCRGFSNVKTTGSSASTSQQNMHQLQYQRLEVKVADLEKEVQKQTELRVMYRKRMERTQDYLRHCLQIAQENGILDLIVTSKGEELQQSPVSVYTISSITSPQIQIPTPPHHAHHHHPSLTAIIDQAKINGWYIDPNEIQLEEKIGEGSTAEIHRGTWRGLEVAVKCISQEFFDTNQNGVAYFSQELETLSRQRHRFVLQLMGACIDPPRRAWVVTEYLGSTLKEWLHGPGTRRRERMIAMEVVEGKLRPKVPCDDAGELGELIELICLCWDKNPSTRPSFATITLCLKTYAKKKNLL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1281 340 Gene3D Transferase(Phosphotransferase) domain 1 261 339 - -
Aed6g1281 340 ProSiteProfiles Protein kinase domain profile. 181 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1281 340 PANTHER OS09G0443600 PROTEIN 281 336 - -
Aed6g1281 340 SUPERFAMILY Protein kinase-like (PK-like) 152 275 IPR011009 -
Aed6g1281 340 MobiDBLite consensus disorder prediction 1 43 - -
Aed6g1281 340 Pfam Protein tyrosine and serine/threonine kinase 181 270 IPR001245 GO:0004672|GO:0006468
Aed6g1281 340 Coils Coil 62 96 - -
Aed6g1281 340 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 41 281 - -
Aed6g1281 340 PANTHER OS09G0443600 PROTEIN 41 281 - -
Aed6g1281 340 ProSitePatterns Protein kinases ATP-binding region signature. 187 208 IPR017441 GO:0005524
Aed6g1281 340 Gene3D Phosphorylase Kinase; domain 1 169 260 - -
Aed6g1281 340 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 281 336 - -
Aed6g1281 340 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1281 Aed-Chr6 17528015 17531742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1281 174 288 MAP Kinase Kinase Kinase AT5G11850 38.525 1.55e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Aed6g1281 PK_Tyr_Ser-Thr 2.5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1281 - - gmx:102666416 435.647