Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1279 ATGGACGCAGTTTACAATCCTCGTACCGTCGAAGAGGTCTTTAGGGATTTCAAGGGTCGCAGAGCTGCTCTGATTAAAGCCCTCACCACCGATGTTGAAGAGTTCTACCAGCAGTGCGATCCCGAGAAGGAAAATCTCTGCCTTTATGGATTTCCAAGTGAGCAGTGGGAAGTCAATCTGCCAGCTGAGGAGGTGCCCCCAGAGCTTCCAGAGCCAGCATTGGGCATTAACTTTGCCAGAGATGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCTGTACACAGTGATGCTTGGTTGCTTGCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGACAAGGCTGATAGGAAACGACTGTTTAACATGATAAATGATCTTCCAACTGTATTTGAGGCTGTGACTGGGATGCCCAAGAAACAAGGAAAGGAAAAGTTATCAGTTTCAAATCATAGCAGTACCAAATCAAAATCAAACTCTAAGCGAGGTTCTGAATTGAAGTACACCAAAGCAATGCAATCGAAGGACGAGAATGATGAGGGTGCGGTTGGGACTACGGCTTTGGCTTTGGCTATGGCTATGGAAGACGAAGACGAAGAGGAACATGGAGAGACTTTGTGTGGGGCATGTGGAGAGAGCTATGCTGCTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAATGGTTCCATGGAAAGTGCGTGAAGATTACCCCAGCAAGGGCTGAGCATATCAAGCAATACAAATGTCCCTCTTGCAGCAACAAGAGATCTCGACCTTGA 786 0.4669 MDAVYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTVFEAVTGMPKKQGKEKLSVSNHSSTKSKSNSKRGSELKYTKAMQSKDENDEGAVGTTALALAMAMEDEDEEEHGETLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRSRP 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1279 261 PANTHER CPG BINDING PROTEIN 3 261 IPR045104 GO:0006355|GO:0042393
Aed6g1279 261 MobiDBLite consensus disorder prediction 159 178 - -
Aed6g1279 261 Pfam Alfin 9 136 IPR021998 GO:0006355|GO:0042393
Aed6g1279 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 256 IPR013083 -
Aed6g1279 261 SMART PHD_3 207 255 IPR001965 -
Aed6g1279 261 Pfam PHD-finger 208 257 IPR019787 -
Aed6g1279 261 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 261 - -
Aed6g1279 261 SUPERFAMILY FYVE/PHD zinc finger 197 259 IPR011011 -
Aed6g1279 261 ProSitePatterns Zinc finger PHD-type signature. 208 254 IPR019786 -
Aed6g1279 261 ProSiteProfiles Zinc finger PHD-type profile. 205 257 IPR019787 -
Aed6g1279 261 CDD PHD_AL_plant 207 257 IPR044104 -
Aed6g1279 261 MobiDBLite consensus disorder prediction 142 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1279 Aed-Chr6 17506849 17510745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1279 3 260 Alfin-like Transcription Factor Family AT3G42790 72.201 3.65e-125 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Aed6g1279 Alfin 3.5e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1279 - - gmx:100797908 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1279 6 17506849 17510745 Aed6g1279 6 17506849 17510745 ECH