Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1278 ATGAGCTCAAGTCCAACAACAACCTACGAAGATTCAGTTAATTCAGATTCCCAAACCCAACCCCACGCGCCGCCGAAGGAAATAGAGTGGCACATGCTGGACAAGTCGAAGTTCTTCTTCCTAGGAGCGGCCATGTTCTCCGCTGTCTCCGGCGCGCTCTACCCCGCCGTGGTCTTAAAGACACGTCAGCAAGTGTCCTCCGCCGGAGTCTCGTGCCGCAACATGTCGCGCTCCATCATGCGCTGCGAGGGCTTCCGAGGTTTCTACAGAGGCTTCGGCACTTCCTTGATGGGAACAATCCCCGCACGTGCGCTATACATGTCTGCGCTCGAAGTCACGAAGGCCAACGTCGGCACTGCCACCGTTCGCTTGGGGTTTTCCGACGCCTCGGCCACCGCCATCGCGAATGCCGCCGGAGGAGTCGCTTCTGCTATGGCCGCGCAATTGGTGTGGACCCCAGTTGATGTCGTGAGCCAGAGACTCATGGTCCAAGGATGCAACAAAATGTGTTACAGGAATGGTTTGGATGCATTCAGGAAAATTCTGGGCGTTGATGGACCAAGAGGGTTCTACAGAGGCTTCGGAGTTTCAATTGTAACATATGCTCCCTCCAACGCGGTTTGGTGGGCATCGTATTCAATGGTAAACAGGCTCATTTATGGTGCGTGTGGTGGTTGCGGACGCGATTCTTCCAAGGTGATGGTGGGTGTGCAGGGTTTGAGTGCGGTTATGGCAAGTGGGGCTTCGGCGATTGTGACTATGCCACTCGACACGATAAAGACGAGGTTGCAGGTGTTGGATGCTGAGGAGATAAATGGAAGAAGGAGACCACTGACTCTGTCGCAGGCTGTTCGGAATTTGGTTAAGGAAGGGGGGGTTTGGGGTTGTTACAGAGGGTTGGGACCGAGGTGGGCTTCCATGTCTATGTCTGCTGCGACCATGATTACTACCTATGAATTCTTGAAACGCGTGTCTGCTAAGAATATTGACAGATTAACTGTGTAG 1005 0.5373 MSSSPTTTYEDSVNSDSQTQPHAPPKEIEWHMLDKSKFFFLGAAMFSAVSGALYPAVVLKTRQQVSSAGVSCRNMSRSIMRCEGFRGFYRGFGTSLMGTIPARALYMSALEVTKANVGTATVRLGFSDASATAIANAAGGVASAMAAQLVWTPVDVVSQRLMVQGCNKMCYRNGLDAFRKILGVDGPRGFYRGFGVSIVTYAPSNAVWWASYSMVNRLIYGACGGCGRDSSKVMVGVQGLSAVMASGASAIVTMPLDTIKTRLQVLDAEEINGRRRPLTLSQAVRNLVKEGGVWGCYRGLGPRWASMSMSAATMITTYEFLKRVSAKNIDRLTV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1278 334 MobiDBLite consensus disorder prediction 1 24 - -
Aed6g1278 334 PRINTS Mitochondrial carrier protein signature 89 107 IPR002067 GO:0055085
Aed6g1278 334 PRINTS Mitochondrial carrier protein signature 140 162 IPR002067 GO:0055085
Aed6g1278 334 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 324 IPR018108 -
Aed6g1278 334 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 16 330 - -
Aed6g1278 334 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 116 IPR018108 -
Aed6g1278 334 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 16 330 - -
Aed6g1278 334 ProSiteProfiles Solute carrier (Solcar) repeat profile. 131 218 IPR018108 -
Aed6g1278 334 MobiDBLite consensus disorder prediction 1 22 - -
Aed6g1278 334 Pfam Mitochondrial carrier protein 47 115 IPR018108 -
Aed6g1278 334 Pfam Mitochondrial carrier protein 132 220 IPR018108 -
Aed6g1278 334 Pfam Mitochondrial carrier protein 237 327 IPR018108 -
Aed6g1278 334 Gene3D Mitochondrial carrier domain 7 222 IPR023395 -
Aed6g1278 334 Gene3D Mitochondrial carrier domain 225 333 IPR023395 -
Aed6g1278 334 SUPERFAMILY Mitochondrial carrier 31 321 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1278 Aed-Chr6 17498999 17501315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1278 27 328 Chloroplast and Mitochondria Gene Families AT5G26200 66.456 5.32e-147 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1278 K15121 - gmx:100797365 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1278 6 17498999 17501315 Aed6g1278 6 17498999 17501315 ECH
Aed4g1670 4 21244370 21245428 Aed6g1278 6 17498999 17501315 ECH