LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g1270	ATGATGAATTTCTTATCTCTATCAAACATCGGGAGAGAAAAACAGCCACTGAGATTACCAGAGATGGTGATCACAGTTTTTGTTCTTCTGGTGTTGGCCTTTCCTTCTGCTCTCAAAACAGCAGAATCACTAAATTTCAACATAACAAACTTCAACGACCCCGAGAGTGCTAAAAATATGGCATACGTGGGTGATGGCAAAGTAAACAAAAACGGTTCTATAGAGCTGAACATAGTGGACTATCCTCTCCGCGTTGGGAGAGCCTTGTACGGACAACCCCTGCACCTGTGGGACTCATCTTCTGGTATAGTAACAAACTTCTCAACGCGCTTCACTTTCACTGTTGACAGAGGAAACAACAAAAGTGCTTCCTACGCTGACGGTTTCGCTTTCTACTTAGCCCCTCGTGGCTACCAGATTCCTCTCAACGGAGCAGGCGGCACTTTTGCGCTTTTCAACGTAACTTCGAATCCCTTCATTCCCCATAACCACGTGCTCGCTGTTGAGTTTGACACATTTAAAGACACAATTGATCCTCCCTATCAGCACGTTGGCATAGACGATAACTCTATAAAATCCGTCGCTACTGCCGAGATCGACATCGACAGAAACCTCGGAAAGAGATGCAACGTTTTGATAACCTACGACGCTCCGAACAAGACACTCTCCGTGTCTTGGTCCTTTAACGGCGCCGCAACGCCGAATTCGAAGAACTCTTCGCTTTCTTCCCAGATTGACGTCATGGACATTCTTCCTGAGTGGGTGGATGTTGGGTTCTCCGCTTCAACCCACGACCTCACTGAACAGAACATTATCCATTCTTGGGAGTTCAGATCAACTTTGAATTCCTCGGATGTAGCAGAGAAGCACGGAAACGGGTTGAACCAGGTTGTGCGGGTTGTTGCCGTGACGTGTCCGATAGTTTTGGTGGTTGTTGCCGCAGCAGCTTGTGTTATAATCAAGAAGAGAAGGGGTAAGGGTGATAATGATAACGATGGTTTACGTGGACCCACATCGATTAAGTTTGATTTGGATAGAGCCACTATACCTAGAAGATTTGATTACAAAGAACTAGTTGCAGCCACCAAAGGGTTCGCTGATGATACAAGGCTTGGGCGAGGAGGCTCGGGACAAGTTTACAAAGGGGTACTAAGTTATTTAGGAAAGGAAGTTGCTGTTAAAAGAATTTTCACTAACTTCGAAAATTCAGAGAGAGTTTTCCTCAACGAGGTTAGGATCATAAGCCGTCTTATACACAGAAACTTGGTCCAGTTCATAGGATGGTGCCACGAGCAAGGAGAGTTTTTGTACAAGGTAGCATTAGGCATGGCTTTAGCACTTCGTTATCTTCACGAGGAGGTTGAGCAGTGTGTTCTTCACAGGGATATTAAGCCGGCTAATGTCTTGTTGGACACAGATTTTAGCAGCAAACTTGGAGATTTTGGGATGGCAAAGTTTGTTGATCCAATGTTGAGGATTCAGCTGGGAACAGGAGTTGTGGGGACTTATGGGTACCTTGCTCCAGAATATATCAATGGTGGTGGAGCAAGCAAGGAATCAGACATTTATAGTTTTGGAGTTGTGGCTCTCGAGATTGCATGTGGGAAGAGGACTTACCATGATGGTGAGTATCATGTGCCTCTAGTGAACTGGGTGTGGCAACTGTATGTTAAAGGGAATGTTCTGGATGCTGTTGATGAGAGACTTAACAAGGAGTTTGATGTGGATGAAATGACAAACTTGATTATTGTGGGGTTATGGTGTACTAACCCAAACGACAAGGAAAGGCCAAAAGCTACACAAGTAATAAAAGTTCTTCAGCTTGAAGCACCATTGCCTATGCTTCCAATGGATATGCATGATCGTCTTCCTCCTTCTCTAATTAAGCATGCGATTGCGCAACATCCCACTAATTCCTTGCAAGCATTGCCCTTCACTAATAGCCTTGTTAGTGATGGACGTTAA	1965	0.4483	MMNFLSLSNIGREKQPLRLPEMVITVFVLLVLAFPSALKTAESLNFNITNFNDPESAKNMAYVGDGKVNKNGSIELNIVDYPLRVGRALYGQPLHLWDSSSGIVTNFSTRFTFTVDRGNNKSASYADGFAFYLAPRGYQIPLNGAGGTFALFNVTSNPFIPHNHVLAVEFDTFKDTIDPPYQHVGIDDNSIKSVATAEIDIDRNLGKRCNVLITYDAPNKTLSVSWSFNGAATPNSKNSSLSSQIDVMDILPEWVDVGFSASTHDLTEQNIIHSWEFRSTLNSSDVAEKHGNGLNQVVRVVAVTCPIVLVVVAAAACVIIKKRRGKGDNDNDGLRGPTSIKFDLDRATIPRRFDYKELVAATKGFADDTRLGRGGSGQVYKGVLSYLGKEVAVKRIFTNFENSERVFLNEVRIISRLIHRNLVQFIGWCHEQGEFLYKVALGMALALRYLHEEVEQCVLHRDIKPANVLLDTDFSSKLGDFGMAKFVDPMLRIQLGTGVVGTYGYLAPEYINGGGASKESDIYSFGVVALEIACGKRTYHDGEYHVPLVNWVWQLYVKGNVLDAVDERLNKEFDVDEMTNLIIVGLWCTNPNDKERPKATQVIKVLQLEAPLPMLPMDMHDRLPPSLIKHAIAQHPTNSLQALPFTNSLVSDGR	654

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g1270	654	ProSitePatterns	Protein kinases ATP-binding region signature.	371	394	IPR017441	GO:0005524
	Aed6g1270	654	PANTHER	LECTIN RECEPTOR KINASE	44	620	-	-
	Aed6g1270	654	SUPERFAMILY	Protein kinase-like (PK-like)	349	640	IPR011009	-
	Aed6g1270	654	SMART	serkin_6	365	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed6g1270	654	ProSitePatterns	Legume lectins alpha-chain signature.	251	260	IPR000985	-
	Aed6g1270	654	PANTHER	-	44	620	-	-
	Aed6g1270	654	Gene3D	Phosphorylase Kinase; domain 1	350	432	-	-
	Aed6g1270	654	Gene3D	Transferase(Phosphotransferase) domain 1	433	611	-	-
	Aed6g1270	654	SUPERFAMILY	Concanavalin A-like lectins/glucanases	42	282	IPR013320	-
	Aed6g1270	654	CDD	lectin_legume_LecRK_Arcelin_ConA	44	281	IPR001220	GO:0030246
	Aed6g1270	654	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	458	470	IPR008271	GO:0004672\|GO:0006468
	Aed6g1270	654	Pfam	Legume lectin domain	43	285	IPR001220	GO:0030246
	Aed6g1270	654	ProSitePatterns	Legume lectins beta-chain signature.	166	172	IPR019825	-
	Aed6g1270	654	ProSiteProfiles	Protein kinase domain profile.	365	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed6g1270	654	Pfam	Protein kinase domain	367	434	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed6g1270	654	Pfam	Protein kinase domain	439	604	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed6g1270	654	Gene3D	-	41	294	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g1270	Aed-Chr6	17453843	17456486	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g1270	29	619	Receptor kinase-like Gene Family	AT5G10530	42.173	1.26e-149	446

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Aed6g1270		Lectin_legB	1e-63	CL0004

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g1270	-		-	gmx:100305427	999.964