Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1262 ATGATGGCTACCTCGGAACATTTCCACTGCTTCAAAACTTGTCTTCTTTTCTGCTTCTTAATCCTTATTCCATTAGCTCAACCACTATCCTTCAACATACCTAACTTCAGCGAAACTGGAAACACAAGCCTCGTTGAATACTTAGGCGTAGCCAAGACTGAGAACGGAGCCCTAGTGCTGAACCCACTCATCAACGGTGGAGTTGGACGAGCCATCTATGTCCAACCTCTGCGCCTCAAAAACCCTTCTAACGGAAACGTCGCTGACTTTTCTACTCGCTTTTCGTTCACCATCAACGTTCCCGTTATAAAAAACTACGCTGATGGCTTTGCTTTCTACATAGCACCCCTTGCCTATGCCTTCCAGATTCCGTCTTCTTCATCTGGTTTCCGTCTTGGCCTATACGATAACACCGCAGTCCAAATCGTTGCTGTTGAATTTGACACTTATGTTAACGAGCTTGACCCACCGATGCAGCACGTAGGGATCAACAATAACTCTGTGGCATCACTTGAGTATAAGAAGTTTGATATTGAAAGAAACATAGGGAAGATGGGGCGTGCTTTGATAACTTACAATGCTTCTACAAAACTCCTTTCTGTCTCTTGGTCCTTTGATGGAAGTACATCTAACGCTAATTCTCTTTCGCACCAGATTGACCTAGGGGAAACTCTGCCGGAGTGGGTCGCTGTTGGGTTTTCGGGTTCAACCGGGTCGTCCAGTGAGGAAAATGTTATTCATTCCTGGGAATTCAGTTCGAGTCTAGATATAAATTTCAGTGAAAATGATGACAACGTGATTACCAAATACAAGGTTCAGGTCAAAGTACTAGTTGTTGCAGTGATTTGTTCTATTGTTTTTGTGCTCGTGGTTATTAGTATTATTACTTGGTTGATCATTATCAAGAAGAGAAGAAGCGAGGATGGTTTTGGTTTGGATAGAGCAGCTATGCCCAGAAGGTTTGGTTATACTGAATTAGTAGCAGCCACCAACGGTTTTGCAGATGATAGAAGGCTCGGTGAAGGAGGCTATGGGCAAGTCTACAAAGGCTTTCTCAGTGATCTAGGGTGGGTGGTTGCGGTTAAAAGAATATTTACTGATGTTGAAGATGCAGAGAGAATATTCACAAACGAGGTAAAGATTATAAGTCGTCTTATACATAGAAACCTTGTGCAGTTCATGGGGTGGTGCCACGAGGAAGGAGAGTTATTAATGGTTTTTGAGCACATGACTAATGGAAGCCTTGACACTCATCTATTTGGAAGCAGAAGAACTTTGGCATGGGGTGTGAGATACAACATAGCATTAGGAGTGGCGAGAGCACTTCGATATCTTCATGAAGACGCGGAACGGTGTGTTCTTCATAGGGATATTAAGTCCGCTAATGTTTTATTGGACACGGATTTCAATACTAAGGTTAGTGACTTTGGGATGGCGAAGTTGGTGGATCCAAGATTGAGGACTCAGAAGACAAAGGTGGTGGGGACTTACGGCTACTTGGCTCCGGAATATGTGAAAGAAGGAAGGGCTAGCAAGGAATCAGACATGTACGGTTTTGGGGTTTTGGCTTTGGAGATAGCATGTGGAAGGAGGACTTACAAGGAAGGGGAACATAATCATGTGCCATTGACGAATTGGGTGTGGAAACATTATGTGGATGGAAATGTTTTGGATGTTGCTGATAAGGGATTGAATGGGGATTATGATGTGGATGAAATGAGGTGCTTGATCACTGTGGGACTATGGTGTACCCTCCAGGACCACAAGAAAAGACCAAAGGCAGAACAGGTCATTAATGTTCTTATGCAAGAAAAACCATTGCCAGTTCTGTCAATATGA 1839 0.435 MMATSEHFHCFKTCLLFCFLILIPLAQPLSFNIPNFSETGNTSLVEYLGVAKTENGALVLNPLINGGVGRAIYVQPLRLKNPSNGNVADFSTRFSFTINVPVIKNYADGFAFYIAPLAYAFQIPSSSSGFRLGLYDNTAVQIVAVEFDTYVNELDPPMQHVGINNNSVASLEYKKFDIERNIGKMGRALITYNASTKLLSVSWSFDGSTSNANSLSHQIDLGETLPEWVAVGFSGSTGSSSEENVIHSWEFSSSLDINFSENDDNVITKYKVQVKVLVVAVICSIVFVLVVISIITWLIIIKKRRSEDGFGLDRAAMPRRFGYTELVAATNGFADDRRLGEGGYGQVYKGFLSDLGWVVAVKRIFTDVEDAERIFTNEVKIISRLIHRNLVQFMGWCHEEGELLMVFEHMTNGSLDTHLFGSRRTLAWGVRYNIALGVARALRYLHEDAERCVLHRDIKSANVLLDTDFNTKVSDFGMAKLVDPRLRTQKTKVVGTYGYLAPEYVKEGRASKESDMYGFGVLALEIACGRRTYKEGEHNHVPLTNWVWKHYVDGNVLDVADKGLNGDYDVDEMRCLITVGLWCTLQDHKKRPKAEQVINVLMQEKPLPVLSI 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1262 612 PANTHER - 28 611 - -
Aed6g1262 612 SMART serkin_6 333 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1262 612 Gene3D Phosphorylase Kinase; domain 1 318 409 - -
Aed6g1262 612 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 256 IPR013320 -
Aed6g1262 612 Gene3D - 27 270 - -
Aed6g1262 612 Gene3D Transferase(Phosphotransferase) domain 1 410 610 - -
Aed6g1262 612 CDD lectin_legume_LecRK_Arcelin_ConA 29 255 IPR001220 GO:0030246
Aed6g1262 612 Pfam Protein kinase domain 334 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1262 612 SUPERFAMILY Protein kinase-like (PK-like) 317 600 IPR011009 -
Aed6g1262 612 Pfam Legume lectin domain 29 264 IPR001220 GO:0030246
Aed6g1262 612 ProSitePatterns Legume lectins beta-chain signature. 143 149 IPR019825 -
Aed6g1262 612 ProSitePatterns Protein kinases ATP-binding region signature. 339 362 IPR017441 GO:0005524
Aed6g1262 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Aed6g1262 612 ProSitePatterns Legume lectins alpha-chain signature. 225 234 IPR000985 -
Aed6g1262 612 ProSiteProfiles Protein kinase domain profile. 333 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1262 612 PANTHER LECTIN RECEPTOR KINASE 28 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1262 Aed-Chr6 17415652 17417490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1262 13 610 Receptor kinase-like Gene Family AT5G10530 43.153 2.66e-162 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Aed6g1262 Pkinase 5.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1262 - - gmx:100795245 928.317