Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1246 ATGGTCGTTCAACTCTTCAGCACAGCAATCATAATGGATGAAAAGGTGGAAACTCTTAAAGCTGAGTTACAACGATTGAAAGAGGAGAACAACACCCTAAGACTGATGCTTGATGTTCTAACCAGCAAGTGCACAAAGCTTGAATCACATCTTCAAGAGATAAACAAGGCACATGTACACAAGGGCATGATGAGCTCAAATCAAATAGTGTCATCAGTAACAGTACCACCTATATTTGAATTTGATACAAACAAGAGACAGAGACTACTAGAGTTTCCCACAGCAAAAAAACCATTACAAATCTTTGTCAGAACACACCCCAAGGATGATAGTTTGATAGTAAAAGATGGCTATCAGTGGAGGAAGTATGGACAAAAGGTCACCAAAGACAATGCTTCACCAAGAGCTTATTTTAGGTGTTCCATGGCTCCCATTTGCCCGGCAAAAAAGAAGGTGCAAAGATGTTTACATGACAAGTCAATCCTTGTTGCAACATATGATGGAGAGCACAACCATGGTGCCCTTCACGAGTCATCTTCATCCACACCTAAATGCTCATCATCACCAATGGCTAATAAGTTACCTCTGAAGATGACAAGCATGCCAAATGACAACAAAGAAGCCATGAACATTGATTTGGCTCTTTCTGGGTGGTCTCAAACAGATAGGAGACATCATTGTGAAGATGTCATGCAACAGAATAATGAGCAACATGGTAGCAGCAACAACATCAAAATTGAAGAATATGTAAGTTCTCTAATCAAGGATCCTGACTTCACCATGTCATTAGCTGAAGCAGTTGCACGCACCATCACTGGCCAGCAAAAGCAACAAGATCTAAACCTCAATTTGGATCTTCCAGAAGAGTGA 870 0.4069 MVVQLFSTAIIMDEKVETLKAELQRLKEENNTLRLMLDVLTSKCTKLESHLQEINKAHVHKGMMSSNQIVSSVTVPPIFEFDTNKRQRLLEFPTAKKPLQIFVRTHPKDDSLIVKDGYQWRKYGQKVTKDNASPRAYFRCSMAPICPAKKKVQRCLHDKSILVATYDGEHNHGALHESSSSTPKCSSSPMANKLPLKMTSMPNDNKEAMNIDLALSGWSQTDRRHHCEDVMQQNNEQHGSSNNIKIEEYVSSLIKDPDFTMSLAEAVARTITGQQKQQDLNLNLDLPEE 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1246 289 ProSiteProfiles WRKY domain profile. 109 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed6g1246 289 SMART WRKY_cls 114 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed6g1246 289 PANTHER WRKY TRANSCRIPTION FACTOR 49 12 271 - -
Aed6g1246 289 SUPERFAMILY WRKY DNA-binding domain 110 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed6g1246 289 Pfam WRKY DNA -binding domain 115 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed6g1246 289 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 12 271 IPR044810 GO:0003700
Aed6g1246 289 Coils Coil 9 57 - -
Aed6g1246 289 Gene3D WRKY domain 100 174 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1246 Aed-Chr6 17270436 17273157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1246 13 279 WRKY Transcription Factor Family AT1G80840 32.550 7.74e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aed6g1246 WRKY 3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1246 - - gmx:100170679 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1246 6 17270436 17273157 Aed4g1735 4 21707986 21709985 PCT